PackagesR/depen at main · BioArchLinux/PackagesR · GitHub

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// # in bioconductor, ### follow with no check
#abadata
#adductdata
###
#affydata
#airway
akmbiclust
alabama
aldex2
algdesign
all
alluvial
als
alsace
altcdfenvs
amap
amountain
ancombc
aneufinderdata
annaffy
annotate
annotationdbi
annotationfilter
annotationforge
annotationhub
annotationhubdata
annotatr
anocva
anota
anvil
anylib
aod
apcluster
apcomplex
ape
apeglm
aplot
argparse
aricode
arm
aroma.affymetrix
aroma.core
aroma.light
arrayexpress
arrmdata
arrow
arules
ashr
assertive
assertive.sets
assertthat
asset
assign
atacseqqc
aucell
av
available
aws
aws.s3
aws.signature
babelgene
backbone
ballgown
bamlss
bamsignals
base64
base64enc
base64url
baseline
basilisk
basilisk.utils
batchelor
batchjobs
batchtools
bayseq
bb
bbmisc
bbmle
bc3net
beachmat
beadarray
beaddatapackr
beanplot
beeswarm
benchmarkme
betareg
bezier
bgeedb
bh
biasedurn
bibitr
bicare
biclust
biganalytics
biglm
bigmemory
bigrquery
bigstatsr
binom
binr
biobase
biobroom
bioccheck
biocfilecache
biocgenerics
biocio
biocmanager
biocneighbors
biocparallel
biocset
biocsingular
biocstyle
biocthis
biocversion
biocviews
biodb
biodist
biomart
biomartr
biomformat
bionero
bionet
biosigner
biostrings
biovizbase
biscuiteerdata
bit
bit64
bitops
biwt
bladderbatch
blandaltmanleh
blme
blockmodeling
bluster
bma
bnlearn
bnstruct
bookdown
boolnet
bootstrap
bprmeth
breakpointrdata
breastcancervdx
brew
brglm
broom
broom.mixed
browserviz
bs4dash
bsgenome
bsgenome.celegans.ucsc.ce2
bsgenome.drerio.ucsc.danrer7
bsgenome.ecoli.ncbi.20080805
bsgenome.hsapiens.ucsc.hg18
bsgenome.hsapiens.ucsc.hg19
bsgenome.hsapiens.ucsc.hg38
bsgenome.mmusculus.ucsc.mm10
bsgenome.mmusculus.ucsc.mm9
bsplus
bsseq
bufferedmatrix
bumphunter
bumpymatrix
c50
cairo
calibrate
callr
camera
capushe
car
caret
caretensemble
carnival
category
catencoders
catnet
catools
cba
ccapp
ccdata
ccp
cctensor
cdft
celda
celldex
cellhts2
cellnoptr
cepo
cgdsr
cghbase
cghcall
champdata
changepoint
checkmate
chemminer
chemometrics
chic.data
chipenrich.data
chippeakanno
chipseeker
chipseq
chipxpressdata
chk
chromhmmdata
chromstardata
chron
circlize
circular
ckmeans.1d.dp
cleanupdtseq
cleaver
cli
clisymbols
clst
clue
clustercrit
clusterexperiment
clusterprofiler
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clusterrepro
clustersim
clustree
clustvarsel
clvalid
cmap
cmap2data
cmdfun
cmplot
cner
cn.mops
cnorode
cntools
cobs
coda
codedepends
codex
cogaps
cohcapanno
coin
colorramps
colorspace
colortools
colourpicker
combinat
combinepvalue
complexheatmap
compositions
compquadform
concaveman
condformat
config
conicfit
consensusclusterplus
consensusseeker
contrast
convert
coop
copula
copyhelper
copynumberplots
coregx
corncob
corpcor
corrgram
corrplot
cosmic.67
covr
cowplot
cp4p
cpgassoc
cplm
cpp11
cqn
crayon
crisprseek
crlmm
crmn
csaw
ctc
cubature
curatedtcgadata
curl
cytoglmm
cytolib
cytomapper
cytometree
cytoml
dada2
damirseq
dapar
dapardata
dasper
data.table
data.tree
dbi
dbplyr
dbscan
ddpcr
ddrtree
decipher
decomptumor2sig
deconstructsigs
decontam
deeppincs
deepsnv
deformats
degreport
delaporte
delayedarray
delayeddataframe
delayedmatrixstats
delayedrandomarray
deldir
dendextend
densityclust
depmixs4
derfinder
derfinderhelper
derfinderplot
deriv
desctools
deseq2
desingle
desolve
destiny
devtools
dexmadata
dexseq
dgof
diagram
diagrammer
dichromat
diffbind
diffcorr
diffcyt
diffr
diffusr
digest
diptest
dir.expiry
dirichletmultinomial
dirichletreg
dirmult
discriminer
distances
distinct
distr
distrex
dml
dmrcate
dmrseq
dmt
dmwr2
dnabarcodes
dnacopy
dnet
doby
docopt
do.db
doparallel
dorng
dorothea
dose
dosnow
downloader
dplr
dplyr
dqrng
drawer
drawr
drc
drimpute
drimseq
dropletutils
drtmle
drugvsdiseasedata
dss
dt
dtangle
dtplyr
dtw
dunn.test
dynamictreecut
dyndoc
e1071
earth
easierdata
easypubmed
easyrnaseq
ebarrays
ebimage
ebseq
echarts4r
ecp
ecume
edaseq
edger
effsize
egg
egseadata
einsum
elasticnet
elitism
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ellipsis
elmer
elmer.data
emdbook
emdist
emmeans
empiricalbrownsmethod
emt
energy
enrichedheatmap
enrichmentbrowser
enrichplot
enrichr
ensdb.hsapiens.v75
ensdb.hsapiens.v86
ensembldb
ensemblvep
ensurer
entropy
entropyexplorer
envipat
envstats
epidish
epinem
epir
epivizr
epivizrdata
epivizrserver
epivizrstandalone
eulerr
eva
evd
evmix
ewcedata
excelr
exomecopy
experimenthub
expm
extdist
extradistr
extremes
faahko
fabia
factoextra
factominer
fansi
fastcluster
fastdummies
fastica
fastmatch
fastseg
fbasics
fcbf
fda
fdb.infiniummethylation.hg19
fdrtool
feather
feature
ff
ffbase
ffield
ffpe
fftw
fftwtools
fgarch
fgnet
fgsea
fields
filehash
filelock
filematrix
findmyfriends
fis
fishpond
fission
fitdistrplus
flashclust
flexclust
flexdashboard
flexmix
flextable
flowclust
flowcore
flowdensity
flowfp
flowmeans
flowmerge
flowpeaks
flowsom
flowsorted.blood.450k
flowstats
flowutils
flowviz
flowworkspace
fmcsr
fme
fmsb
fnn
fontawesome
forcats
foreach
forecast
forestplot
formattable
formula
formula.tools
fpc
freqprof
frma
fs
fselector
fst
furrr
futile.logger
future
future.apply
ga
ga4ghclient
gaga
gage
gamlss
gap
gbm
gcrma
gcspikelite
gdata
gdsarray
gdsfmt
geepack
genalg
genefilter
genefu
genelendatabase
genemeta
genenet
geneplotter
generics
geneselectmmd
genetclassifier
genetics
genie3
genkern
genlasso
genlib
genomation
genomeinfodb
genomeinfodbdata
genomeintervals
genomicalignments
genomicdatacommons
genomicfeatures
genomicfiles
genomicinteractions
genomicranges
genomicscores
genomicstate
genomictools
genomictools.filehandler
geometry
geomxtools
geoquery
getopt
getoptlong
getpass
gfa
ggalluvial
ggally
ggalt
gganimate
ggbeeswarm
ggbio
ggcorrplot
ggcyto
ggdendro
ggextra
ggfittext
ggforce
ggfortify
ggfun
gghalves
gghighlight
ggiraph
ggm
ggmcmc
ggnetwork
ggnewscale
ggplot2
ggplotify
ggplot.multistats
ggpmisc
ggpointdensity
ggprism
ggpubr
ggraph
ggrastr
ggrepel
ggridges
ggsci
ggseqlogo
ggside
ggsignif
ggstar
ggtext
ggthemes
ggtree
ggtreeextra
ggvis
ggwordcloud
gh
git2r
glad
glasso
glimma
glm2
glmgampoi
glmmtmb
glmnet
glmpca
globaloptions
globaltest
glue
gmapr
gmodels
gmp
go.db
gofuncr
golem
googleauthr
googlecloudstorager
googlevis
goric
gosemsim
goseq
gostats
gplots
gprofiler
gprofiler2
gptk
graddescent
grain
graph
graphite
graphpac
grbase
greylistchip
gridbase
gridextra
gridsvg
grimport
grr
gsa
gseabase
gsl
gsmoothr
gss
gstat
gsubfn
gsva
gsvadata
gtable
gtools
gtrellis
guideseq
gunifrac
gviz
gwascat
gwasexacthw
gwastools
h5vcdata
haplo.stats
hardyweinberg
harman
harmonicmeanp
hash
hdf5array
heatmap3
heatmaply
heatplus
helloranges
hexbin
hgnchelper
hgu133a2.db
hgu133a.db
hgu133plus2.db
hgu95av2.db
hh
hiannotator
hiccompare
hiddenmarkov
highcharter
hilbertvis
hilda
hiver
hmisc
hmmcopy
homologene
homo.sapiens
hopach
howmany
hpar
hsmmsinglecell
htm2txt
htmltools
htmlutils
htmlwidgets
htqpcr
htscluster
htsfilter
httpuv
httr
huge
hwriter
hyperdraw
hypergraph
ibbig
ic10
icens
icluster
ics
icsnp
idpmisc
idr
igraph
ihw
illumina450probevariants.db
illuminahumanmethylation450kanno.ilmn12.hg19
illuminahumanmethylation450kmanifest
illuminahumanmethylationepicanno.ilm10b2.hg19
illuminahumanmethylationepicanno.ilm10b4.hg19
illuminahumanmethylationepicmanifest
illuminaio
imager
imp4p
import
impute
imputelcmd
ineq
infotheo
interactionset
interactivedisplaybase
intergraph
intervals
intrinsicdimension
invariantcausalprediction
ipac
ipred
iranges
irdisplay
irkernel
irlba
irr
isa2
isee
ismev
iso
isocorrector
isogene
isva
italicsdata
iterators
ivas
jackstraw
jade
jaspar2018
jpeg
jsonlite
kableextra
karyoploter
kebabs
keggandmetacoredzpathwaysgeo
keggdzpathwaysgeo
kegggraph
keggrest
keras
kernlab
kinship2
kknn
kmer
kmlshape
knitr
knitrbootstrap
knn.covertree
kodata
kohonen
kpmt
kriging
ks
ksamples
labeling
laplacesdemon
lars
lasso2
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later
latex2exp
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les
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lifecycle
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limma
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linkcomm
linnorm
liquidassociation
lme4
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lmtest
locfdr
locfit
log4r
logger
logging
logicreg
logistf
logspline
lokern
longitudinal
loose.rock
lowmacaannotation
lpe
lpsolve
lpsolveapi
lpsymphony
lsa
lsd
lsr
lubridate
lumi
lumihumanall.db
lungcanceracvssccgeo
lymphoseqdb
m3drop
maaslin2
made4
mafdb.1kgenomes.phase3.hs37d5
mafdb.exac.r1.0.hs37d5
mafdb.gnomadex.r2.1.hs37d5
maftools
mageckflute
magicaxis
magick
magrittr
makecdfenv
maldiquant
mapplots
maps
maptools
maptpx
maptree
markdown
marray
massspecwavelet
mast
matching
matchingr
matlab
matrixcalc
matrixcorrelation
matrixgenerics
matrixstats
matrixtests
matrix.utils
matter
maxlik
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mboost
mcbiopi
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mcmcpack
mcmcprecision
mcseadata
mdqc
mefa
megadepth
memoise
meshdbi
meshr
mess
metacycle
metafor
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metama
metap
metapod
methylclockdata
methylkit
methylmnm
methylpipe
methylumi
metr
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mgfm
mgfr
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mgsz
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mia
mice
microbenchmark
microbiome
mime
minet
minfi
miniui
minpack.lm
minqa
mira
mirbase.db
mirbaseversions.db
mircompdata
mirnatap
mirnatap.db
mirsponger
missforest
missmethyl
mixomics
mixsmsn
mixtools
mkmisc
mlbench
mlinterfaces
mlmetrics
mlp
mlr
mlseq
mltools
mnem
mnormt
modeest
modelmetrics
modstrings
moments
monocle
motifdb
motifmatchr
motifstack
mpinet
mpm
mpmi
mppa
mrfdepth
mrmre
msa
mscoreutils
msfeatures
msgfplus
msgps
msigdb
msigdbr
msm
msmseda
msmstests
msnbase
msstats
msstatsconvert
msstatsptm
msstatsqc
msstatstmt
multcomp
multiassayexperiment
multidataset
multipanelfigure
multtest
mumin
mus.musculus
mustat
mvcclass
mvoutlier
mvtnorm
mwastools
mygene
mzid
mzr
nabor
naivebayes
nanostringnctools
naturalsort
nbclust
nbpseq
ncdf4
ncdfflow
ncigraph
neo4r
netrep
network
networkd3