Issues

Memory overallocation in process_somaticcaller_high
CCBR/LOGAN#113 · opened on Feb 27, 2026
do not use global variables in modules
CCBR/LOGAN#104 · opened on Jun 26, 2025 · 2026-02
1
octopus variant caller does not use available cores & memory
CCBR/LOGAN#103 · opened on Jun 26, 2025
1
ensure reference genomes match renee
CCBR/LOGAN#94 · opened on May 16, 2025
1
use nf-schema for parameter validation
CCBR/LOGAN#93 · opened on Apr 16, 2025
Deepsomatic
CCBR/LOGAN#66 · opened on Nov 21, 2024
Build DV/Bcftools/GLnexus docker
CCBR/LOGAN#63 · opened on Aug 16, 2024
Hg38 Genomes supported
CCBR/LOGAN#59 · opened on Jul 22, 2024
Add Flowchart
CCBR/LOGAN#57 · opened on Jul 19, 2024
CRAM Compression
CCBR/LOGAN#35 · opened on Mar 6, 2024
validate variant calls with seqc2 consortium data
CCBR/LOGAN#33 · opened on Feb 9, 2024
create DAG from nextflow
CCBR/LOGAN#32 · opened on Feb 7, 2024
support optional dragen processor on biowulf
CCBR/LOGAN#31 · opened on Feb 6, 2024
2
compare tools for SNV, Indels, SV, EC-DNA vs GDC pipeline
CCBR/LOGAN#30 · opened on Feb 6, 2024
2
Docker base Programs
CCBR/LOGAN#9 · opened on Oct 24, 2023
1
QC Improvements
CCBR/LOGAN#7 · opened on Oct 18, 2023
CNV/SV Caller
CCBR/LOGAN#5 · opened on Sep 26, 2023
GUI development
CCBR/LOGAN#4 · opened on Sep 22, 2023
Identify benchmarking data
CCBR/LOGAN#3 · opened on Sep 22, 2023