From 5df43076ee73cdc78a9b276a7352f2e480a9c16d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 24 Sep 2026 20:51:53 +0000 Subject: [PATCH] chore(deps): bump the github-actions group across 1 directory with 9 updates Bumps the github-actions group with 9 updates in the / directory: | Package | From | To | | --- | --- | --- | | [actions/checkout](https://github.com/actions/checkout) | `3` | `7` | | [actions/setup-python](https://github.com/actions/setup-python) | `5` | `7` | | [nf-core/setup-nextflow](https://github.com/nf-core/setup-nextflow) | `2` | `3` | | [pietrobolcato/action-read-yaml](https://github.com/pietrobolcato/action-read-yaml) | `1.0.0` | `1.1.0` | | [docker/login-action](https://github.com/docker/login-action) | `2` | `4` | | [docker/build-push-action](https://github.com/docker/build-push-action) | `4` | `7` | | [CCBR/actions](https://github.com/ccbr/actions) | `0.2` | `0.7` | | [actions/create-github-app-token](https://github.com/actions/create-github-app-token) | `2` | `3` | | [actions/add-to-project](https://github.com/actions/add-to-project) | `1.0.2` | `2.0.0` | Updates `actions/checkout` from 3 to 7 - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v3...v7) Updates `actions/setup-python` from 5 to 7 - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v5...v7) Updates `nf-core/setup-nextflow` from 2 to 3 - [Release notes](https://github.com/nf-core/setup-nextflow/releases) - [Changelog](https://github.com/nf-core/setup-nextflow/blob/master/CHANGELOG.md) - [Commits](https://github.com/nf-core/setup-nextflow/compare/v2...v3) Updates `pietrobolcato/action-read-yaml` from 1.0.0 to 1.1.0 - [Release notes](https://github.com/pietrobolcato/action-read-yaml/releases) - [Commits](https://github.com/pietrobolcato/action-read-yaml/compare/1.0.0...1.1.0) Updates `docker/login-action` from 2 to 4 - [Release notes](https://github.com/docker/login-action/releases) - [Commits](https://github.com/docker/login-action/compare/v2...v4) Updates `docker/build-push-action` from 4 to 7 - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/v4...v7) Updates `CCBR/actions` from 0.2 to 0.7 - [Release notes](https://github.com/ccbr/actions/releases) - [Changelog](https://github.com/CCBR/actions/blob/main/CHANGELOG.md) - [Commits](https://github.com/ccbr/actions/compare/v0.2...v0.7) Updates `actions/create-github-app-token` from 2 to 3 - [Release notes](https://github.com/actions/create-github-app-token/releases) - [Changelog](https://github.com/actions/create-github-app-token/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/create-github-app-token/compare/v2...v3) Updates `actions/add-to-project` from 1.0.2 to 2.0.0 - [Release notes](https://github.com/actions/add-to-project/releases) - [Commits](https://github.com/actions/add-to-project/compare/v1.0.2...v2.0.0) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '7' dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: actions/setup-python dependency-version: '7' dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: nf-core/setup-nextflow dependency-version: '3' dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: pietrobolcato/action-read-yaml dependency-version: 1.1.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: github-actions - dependency-name: docker/login-action dependency-version: '4' dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: docker/build-push-action dependency-version: '7' dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: CCBR/actions dependency-version: '0.7' dependency-type: direct:production update-type: version-update:semver-minor dependency-group: github-actions - dependency-name: actions/create-github-app-token dependency-version: '3' dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions - dependency-name: actions/add-to-project dependency-version: 2.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: github-actions ... Signed-off-by: dependabot[bot] --- .github/workflows/build.yml | 6 +++--- .github/workflows/docker.yaml | 8 ++++---- .github/workflows/docs-mkdocs.yml | 4 ++-- .github/workflows/draft-release.yml | 4 ++-- .github/workflows/post-release.yml | 4 ++-- .github/workflows/techdev-project.yml | 4 ++-- 6 files changed, 15 insertions(+), 15 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 0620226..cb24af0 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -17,14 +17,14 @@ jobs: python-version: ["3.11"] steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v7 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 + uses: actions/setup-python@v7 with: python-version: ${{ matrix.python-version }} cache: "pip" - name: Install nextflow - uses: nf-core/setup-nextflow@v2 + uses: nf-core/setup-nextflow@v3 with: version: "24.04.4" - name: Install dependencies diff --git a/.github/workflows/docker.yaml b/.github/workflows/docker.yaml index 78b46c0..d83b30b 100644 --- a/.github/workflows/docker.yaml +++ b/.github/workflows/docker.yaml @@ -28,8 +28,8 @@ jobs: if: ${{ fromJson(needs.generate-matrix.outputs.matrix-metadata).include[0] }} # skip if the matrix is empty! runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 - - uses: pietrobolcato/action-read-yaml@1.0.0 + - uses: actions/checkout@v7 + - uses: pietrobolcato/action-read-yaml@1.1.0 id: metadata with: config: ${{ github.workspace }}/docker/${{ matrix.image_dir }}/meta.yml @@ -39,12 +39,12 @@ jobs: echo "DATE=$(date +"%Y-%m-%d")" >> $GITHUB_OUTPUT - name: Login to DockerHub #if: github.event_name != 'pull_request' - uses: docker/login-action@v2 + uses: docker/login-action@v4 with: username: ${{ secrets.DOCKERHUB_USERNAME }} password: ${{ secrets.DOCKERHUB_TOKEN }} - name: Build and push - uses: docker/build-push-action@v4 + uses: docker/build-push-action@v7 # only try building & pushing the container if parsing the metadata worked if: ${{ steps.metadata.outputs['container'] != '' }} with: diff --git a/.github/workflows/docs-mkdocs.yml b/.github/workflows/docs-mkdocs.yml index e6b1404..e81a42d 100644 --- a/.github/workflows/docs-mkdocs.yml +++ b/.github/workflows/docs-mkdocs.yml @@ -24,9 +24,9 @@ jobs: mkdocs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 with: fetch-depth: 0 - - uses: CCBR/actions/mkdocs-mike@v0.2 + - uses: CCBR/actions/mkdocs-mike@v0.7 with: github-token: ${{ github.token }} diff --git a/.github/workflows/draft-release.yml b/.github/workflows/draft-release.yml index 3036566..eabd154 100644 --- a/.github/workflows/draft-release.yml +++ b/.github/workflows/draft-release.yml @@ -21,10 +21,10 @@ jobs: draft-release: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 with: fetch-depth: 0 # required to include tags - - uses: CCBR/actions/draft-release@v0.2 + - uses: CCBR/actions/draft-release@v0.7 with: github-token: ${{ github.token }} version-tag: ${{ github.event.inputs.version-tag }} diff --git a/.github/workflows/post-release.yml b/.github/workflows/post-release.yml index 0726a7b..924aafa 100644 --- a/.github/workflows/post-release.yml +++ b/.github/workflows/post-release.yml @@ -14,9 +14,9 @@ jobs: cleanup: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 with: fetch-depth: 0 - - uses: CCBR/actions/post-release@v0.2 + - uses: CCBR/actions/post-release@v0.7 with: github-token: ${{ github.token }} diff --git a/.github/workflows/techdev-project.yml b/.github/workflows/techdev-project.yml index e55e135..add9fa5 100644 --- a/.github/workflows/techdev-project.yml +++ b/.github/workflows/techdev-project.yml @@ -20,13 +20,13 @@ jobs: - name: Generate a token id: generate-token if: ${{ inputs.github-token == '' }} - uses: actions/create-github-app-token@v2 + uses: actions/create-github-app-token@v3 with: app-id: ${{ vars.CCBR_BOT_APP_ID }} private-key: ${{ secrets.CCBR_BOT_PRIVATE_KEY }} owner: CCBR - - uses: actions/add-to-project@v1.0.2 + - uses: actions/add-to-project@v2.0.0 with: project-url: https://github.com/orgs/CCBR/projects/17 github-token: ${{ steps.generate-token.outputs.token }}