Issues

• Friendly error for unauthorized --partition student usage

  RENEE
  CCBR/RENEE#296 · Filter by author kopardev opened on Jul 22, 2026
  

• jobby fails with Permission denied on pandas_parser.so, breaking onsuccess (student profile)

  RENEE
  CCBR/RENEE#293 · Filter by author kopardev opened on Jul 2, 2026 · 2026-07
  1

  

• dead path: old conda install

  RENEE
  CCBR/RENEE#281 · Filter by author kelly-sovacool opened on Jun 1, 2026 · 2026-07
  

• Fragment is hung over the end of the transcript

  bugRENEE
  CCBR/RENEE#260 · Filter by author kelly-sovacool opened on Feb 20, 2026 · 2026-02
  

• modify runner & builder scripts to create slurm script for submission

  enhancementRENEE
  CCBR/RENEE#249 · Filter by author kelly-sovacool opened on Nov 24, 2025
  1

  

• support dragen

  RENEE
  CCBR/RENEE#241 · Filter by author kelly-sovacool opened on Aug 28, 2025

• Documentation: Replace NoMachine with HPC OnDemand

  documentationRENEE
  Task

  CCBR/RENEE#231 · Filter by author pajailwala opened on Aug 1, 2025

• RENEE GUI error

  RENEE
  Bug

  CCBR/RENEE#230 · Filter by author pajailwala opened on Aug 1, 2025
  

• consolidate renee build

  enhancementRENEE
  CCBR/RENEE#216 · Filter by author kelly-sovacool opened on May 7, 2025

• clean up references to remove redundant files

  enhancementRENEE
  CCBR/RENEE#215 · Filter by author kelly-sovacool opened on May 7, 2025
  2

  

• renee build should be aware of existing genomes & re-use files where possible

  enhancementRENEE
  CCBR/RENEE#214 · Filter by author kelly-sovacool opened on May 7, 2025

• renee build failes at tin_ref when building mmul 10 genome

  RENEE
  CCBR/RENEE#210 · Filter by author kelly-sovacool opened on May 6, 2025
  1

• print slurm job ID when renee cache job is submitted

  enhancementRENEE
  CCBR/RENEE#209 · Filter by author kelly-sovacool opened on May 5, 2025

• Create a test workflow cronjob

  RENEE
  CCBR/RENEE#183 · Filter by author kopardev opened on Dec 2, 2024
  1

  

• improve slurm complete/error email to describe where the pipeline output is

  enhancementRENEE
  CCBR/RENEE#148 · Filter by author kelly-sovacool opened on Aug 5, 2024
  4

• feature: DTU - differential transcript usage

  enhancementRENEE
  CCBR/RENEE#144 · Filter by author kelly-sovacool opened on Aug 5, 2024

• RNA Report is failing with too few samples.

  buglow priorityRENEE
  CCBR/RENEE#117 · Filter by author slsevilla opened on Feb 16, 2024
  2

  

• STAR command is not using TMP dir - moving and removing files created in the outputdir

  bugquestionRENEEwait_for_nxf
  CCBR/RENEE#116 · Filter by author slsevilla opened on Feb 16, 2024

• Feature request: Add "annoFuse"

  enhancementRENEEwait_for_nxf
  CCBR/RENEE#112 · Filter by author kopardev opened on Feb 8, 2024
  1

  

• Feature Request: Add "STAR-Fusion"

  enhancementRENEEwait_for_nxf
  CCBR/RENEE#111 · Filter by author kopardev opened on Feb 8, 2024
  

• Migrate all resources to S3 bucket

  enhancementRENEE
  CCBR/RENEE#89 · Filter by author kelly-sovacool opened on Jan 11, 2024
  

• Feature: add dupradar

  RENEEwait_for_nxf
  CCBR/RENEE#32 · Filter by author kopardev opened on Sep 8, 2023
  1

  

• Feature: add sortmerna to remove rRNA reads prior to alignment

  enhancementRENEEwait_for_nxf
  CCBR/RENEE#31 · Filter by author kopardev opened on Sep 8, 2023
  

• Aribba support for hg19 and mm39

  enhancementRENEE
  CCBR/RENEE#12 · Filter by author kopardev opened on Aug 29, 2023 · 2024-11
  3