Issues

• Eager evaluation with or_insert performs unnecessary work

  optimization
  DaymudeLab/assembly-theory#158 · Filter by author Garrett-Pz opened on Oct 2, 2026

• macOS 14 runners are being deprecated

  infrastructure
  DaymudeLab/assembly-theory#157 · Filter by author jdaymude opened on Oct 2, 2026

• Load and visualize assembly pathways in Python

  feature
  DaymudeLab/assembly-theory#155 · Filter by author jdaymude opened on Jul 31, 2026
  12

  

• Update documentation line width to 100 characters

  documentation
  DaymudeLab/assembly-theory#154 · Filter by author jdaymude opened on Jul 29, 2026
  

• Memory is not freed when the timeout feature is used in repeated index_search calls

  bug
  DaymudeLab/assembly-theory#148 · Filter by author jdaymude opened on May 16, 2026
  1

  

• Profile memory allocations

  infrastructure
  DaymudeLab/assembly-theory#132 · Filter by author AgentElement opened on Dec 8, 2025

• Remove and replace items in the cache

  feature
  DaymudeLab/assembly-theory#120 · Filter by author Garrett-Pz opened on Oct 10, 2025

• Reduce allocations when tree canonizing

  optimization
  DaymudeLab/assembly-theory#102 · Filter by author AgentElement opened on Jul 25, 2025

• Bring canonization up to current commit and optimize.

  algorithm
  DaymudeLab/assembly-theory#83 · Filter by author AgentElement opened on Jul 9, 2025
  

• String & Graph Assembly indices

  feature
  DaymudeLab/assembly-theory#24 · Filter by author colemathis opened on Feb 4, 2025
  1

• Joint Assembly Indices/Spaces

  feature
  DaymudeLab/assembly-theory#23 · Filter by author colemathis opened on Feb 4, 2025