Issues

• Add function for generating MA plot

  enhancement
  NIDAP-Community/DSPWorkflow#159 · Filter by author escauley opened on Nov 8, 2024

• Add quantile normalization

  enhancement
  NIDAP-Community/DSPWorkflow#158 · Filter by author escauley opened on Nov 8, 2024

• Clean up and improve example AOI boxplots from normalization output

  enhancement
  NIDAP-Community/DSPWorkflow#157 · Filter by author escauley opened on Nov 8, 2024

• Remove Q3 to negative background plot from normalization output

  enhancement
  NIDAP-Community/DSPWorkflow#156 · Filter by author escauley opened on Nov 8, 2024

• Add function for plotting Q3 score versus Negative Background

  enhancement
  NIDAP-Community/DSPWorkflow#155 · Filter by author escauley opened on Nov 8, 2024

• Add function for creating QC/Filtering output table with all QC flags and AOI/gene detection rates

  enhancement
  NIDAP-Community/DSPWorkflow#154 · Filter by author escauley opened on Nov 8, 2024

• Print out list of AOIs in lower detection bins from filtering output plot

  enhancement
  NIDAP-Community/DSPWorkflow#153 · Filter by author escauley opened on Nov 8, 2024

• Add annotation faceting for filtering AOI and gene detection plots

  enhancement
  NIDAP-Community/DSPWorkflow#152 · Filter by author escauley opened on Nov 8, 2024

• Separate AOI and Probe/Gene Filtering

  enhancement
  NIDAP-Community/DSPWorkflow#151 · Filter by author escauley opened on Nov 8, 2024

• Print table of QC flags for AOIs

  enhancement
  NIDAP-Community/DSPWorkflow#150 · Filter by author escauley opened on Nov 8, 2024

• Separate AOI and Probe QC

  NIDAP-Community/DSPWorkflow#149 · Filter by author escauley opened on Nov 8, 2024

• Print QC plots separately

  enhancement
  NIDAP-Community/DSPWorkflow#148 · Filter by author escauley opened on Nov 8, 2024

• Remove Sankey Plot from Study Design (Initialization)

  enhancement
  NIDAP-Community/DSPWorkflow#147 · Filter by author escauley opened on Nov 8, 2024

• Create AOI Annotation Summary function

  enhancement
  NIDAP-Community/DSPWorkflow#146 · Filter by author escauley opened on Nov 8, 2024

• Update docker image file for github actions

  NIDAP-Community/DSPWorkflow#131 · Filter by author escauley opened on Oct 18, 2023
  

• Use continuous integration to run R CMD check

  NIDAP-Community/DSPWorkflow#128 · Filter by author kelly-sovacool opened on Oct 18, 2023

• Dependency versions probably should be less specific

  NIDAP-Community/DSPWorkflow#126 · Filter by author kelly-sovacool opened on Oct 18, 2023
  5

• Plot colors to be made consistent across templates

  NIDAP-Community/DSPWorkflow#124 · Filter by author pajailwala opened on Sep 25, 2023
  2

  

• CPTR Colon Cancer Dataset: Subsetting for a class causes error in DEG step

  NIDAP-Community/DSPWorkflow#118 · Filter by author escauley opened on Aug 24, 2023
  1