Issues

• plotAnnoBar warning message

  YuLab-SMU/ChIPseeker#268 · Filter by author JeasonHe-Bot opened on Jan 28, 2026
  1

• a logical issue: all overlapping features and peaks have a zero distance

  YuLab-SMU/ChIPseeker#266 · Filter by author haibol2016 opened on Dec 31, 2025

• ChIPseeker annotation: adding a "multiple" category if a cluster overlaps with multiple features (e.g. exons and introns)

  YuLab-SMU/ChIPseeker#260 · Filter by author santataRU opened on Sep 8, 2025

• ChIPseeker configurations for custom annotations

  YuLab-SMU/ChIPseeker#259 · Filter by author santataRU opened on Sep 7, 2025

• Some problem about Chipseeker 1.44

  YuLab-SMU/ChIPseeker#258 · Filter by author helloworldABCD1234 opened on Aug 11, 2025
  1

• sameStrand=TRUE in annotatePeak not working properly

  YuLab-SMU/ChIPseeker#257 · Filter by author helloworldABCD1234 opened on Aug 8, 2025
  1

• Inconsistent annotation

  YuLab-SMU/ChIPseeker#255 · Filter by author lucolotto opened on May 14, 2025
  1

• downloadGEObedFiles() FTP Download errors and make modifications

  YuLab-SMU/ChIPseeker#254 · Filter by author sunv28 opened on Mar 21, 2025

• how to add title to plotAnnoPie

  YuLab-SMU/ChIPseeker#253 · Filter by author cxtaslim opened on Mar 20, 2025

• annotation cols is different with transcriptId cols

  YuLab-SMU/ChIPseeker#252 · Filter by author teryyoung opened on Mar 17, 2025
  2

• Parts of peaks isnt annotated. length of annotated object is short than peakfiles.

  YuLab-SMU/ChIPseeker#251 · Filter by author teryyoung opened on Mar 15, 2025
  1

• Error in cursor:(cursor + seq - 1) : result would be too long a vector running plotPeakProf2

  YuLab-SMU/ChIPseeker#250 · Filter by author johannesnicolaus opened on Jan 22, 2025
  1

• How to get same Y axis range for plotAvgProf

  YuLab-SMU/ChIPseeker#249 · Filter by author Krithika-Bhuvan opened on Dec 18, 2024

• chipseeker se2gene not working

  YuLab-SMU/ChIPseeker#248 · Filter by author ICE0584 opened on Dec 16, 2024
  1

• questions about the annotation results from ChIPseeker.

  YuLab-SMU/ChIPseeker#247 · Filter by author xuxuefen007 opened on Dec 5, 2024
  1

• Error in plotAvgProf.internal(): "please specify appropreate xcoordinations"

  YuLab-SMU/ChIPseeker#240 · Filter by author Panzer-vor-08 opened on Sep 22, 2024

• how to make a V5 column?

  YuLab-SMU/ChIPseeker#239 · Filter by author sugiYag opened on Sep 6, 2024

• Error: invalid subscript

  YuLab-SMU/ChIPseeker#238 · Filter by author CherryX727 opened on Aug 12, 2024
  3

• Coloration of plotAvgProf

  YuLab-SMU/ChIPseeker#237 · Filter by author aaron-varg opened on Jul 29, 2024

• Mismatch between rownames of tagMatrix and windows indexes

  YuLab-SMU/ChIPseeker#236 · Filter by author lufce opened on May 24, 2024

• Most distances in the flank_gene_distances column are 0

  YuLab-SMU/ChIPseeker#235 · Filter by author rejo27 opened on Mar 23, 2024

• ctg开头的染色体号和geneChr不一样

  YuLab-SMU/ChIPseeker#234 · Filter by author Sherry520 opened on Mar 18, 2024

• error with Ensembl-based annotation

  YuLab-SMU/ChIPseeker#233 · Filter by author yfan18 opened on Mar 11, 2024
  1

• Would be good to add an error message if the peakfile is not bed file

  YuLab-SMU/ChIPseeker#232 · Filter by author pocession opened on Feb 24, 2024

• Feature request: flexible distance ranges in plotDistToTSS()

  YuLab-SMU/ChIPseeker#231 · Filter by author perinom opened on Jan 24, 2024