Issues

• updated usage example

  dib-lab/kSpider#39 · Filter by author taylorreiter opened on Oct 26, 2023
  16

• updated installation instructions

  dib-lab/kSpider#38 · Filter by author taylorreiter opened on Oct 25, 2023
  3

• Community detections

  dib-lab/kSpider#37 · Filter by author mr-eyes opened on May 2, 2023

• pairwise matrix validation in CI

  dib-lab/kSpider#35 · Filter by author mr-eyes opened on Feb 12, 2023

• Test kmer sizes < 15

  dib-lab/kSpider#34 · Filter by author mr-eyes opened on Feb 12, 2023

• Add sourmash as a plugin

  dib-lab/kSpider#33 · Filter by author mr-eyes opened on Feb 1, 2023

• Introduce strongly connected components in the clustering

  dib-lab/kSpider#32 · Filter by author mr-eyes opened on Jan 19, 2023

• Include kmer abundance to allow calculating Bray-Curtis dissimilarity

  enhancement
  dib-lab/kSpider#29 · Filter by author mr-eyes opened on Dec 30, 2022

• Get list of nodes with most undirected edges

  enhancement
  dib-lab/kSpider#25 · Filter by author mr-eyes opened on Nov 18, 2022

• Explore other clustering methods

  dib-lab/kSpider#24 · Filter by author mr-eyes opened on Sep 13, 2022

• Link kSpider updates with sourmash docs

  dib-lab/kSpider#23 · Filter by author mr-eyes opened on Sep 9, 2022

• Add the brute-force mode directly into kSpider

  dib-lab/kSpider#21 · Filter by author mr-eyes opened on Jul 26, 2022

• Convert the clustering Python code to C++

  dib-lab/kSpider#16 · Filter by author mr-eyes opened on Jul 20, 2022
  3

• Is containment threshold enough?

  dib-lab/kSpider#15 · Filter by author mr-eyes opened on Jul 20, 2022

• Consider serializing the pairwise hashtable

  dib-lab/kSpider#13 · Filter by author mr-eyes opened on Jul 20, 2022

• Zoomable circle packing

  enhancement
  dib-lab/kSpider#11 · Filter by author mr-eyes opened on May 30, 2022

• Add mode to assign new kmers to the nearest cluster

  dib-lab/kSpider#8 · Filter by author mr-eyes opened on Jan 30, 2022

• Update docs

  dib-lab/kSpider#7 · Filter by author mr-eyes opened on Jan 30, 2022