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VarCA v2.2.0

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•Last updated Apr 4, 2022

Two major, breaking-changes to address a few issues, port VarCA to Snakemake v6.0.0, and implement some new features that have been on the wishlist for a while.

9% complete

run the post-processing steps in the prepare pipeline in parallel
mcvickerlab/varCA#14 · opened on Jun 9, 2020 · VarCA v2.2.0
a smaller test dataset
mcvickerlab/varCA#33 · opened on Jul 4, 2021 · VarCA v2.2.0
update install instructions
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#27 opened Apr 6, 2021 · Updated Jul 22, 2022Draft
Error: "An output file is marked as pipe, but consuming jobs are part of conflicting groups."
mcvickerlab/varCA#38 · opened on Aug 12, 2021 · VarCA v2.2.0
12
only install the necessary variant caller dependencies
mcvickerlab/varCA#19 · opened on Jul 15, 2020 · VarCA v2.2.0
1
prepare.yml environment yields conflicts with strict channel_priority
mcvickerlab/varCA#30 · opened on Jun 26, 2021 · VarCA v2.2.0
2
comply with snakemake standards
mcvickerlab/varCA#35 · opened on Jul 14, 2021 · VarCA v2.2.0
snakemake validation
mcvickerlab/varCA#18 · opened on Jun 30, 2020 · VarCA v2.2.0
1
Single-end support
mcvickerlab/varCA#37 · opened on Aug 4, 2021 · VarCA v2.2.0
2
add GT info to the VCFs
mcvickerlab/varCA#43 · opened on Apr 1, 2022 · VarCA v2.2.0
11