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'unplugin-vue-components/vite'; +import { scopeCellDLEditorCssPlugin } from './src/renderer/scripts/celldl.plugin.ts'; import { downloadLibopencorJsIfNeeded } from './src/renderer/scripts/download.libopencor.js.ts'; import { libopencorVersion, opencorVersion } from './src/renderer/scripts/libopencor.version.ts'; import { stripPrimeIconsFontFacePlugin } from './src/renderer/scripts/primeicons.plugin.ts'; @@ -31,19 +32,42 @@ export default electronVite.defineConfig({ preload: {}, renderer: { build: { + rolldownOptions: { + // Note: libCellML is built for both the Web and Node.js, and it only imports node:module when running in + // Node.js (which our renderer never is, see ENVIRONMENT_IS_NODE in libcellml.js), so there is no need for + // Vite to replace it with an empty module (and to warn us about it). + + external: ['node:module'] + }, target: 'esnext', copyPublicDir: false - // Note: our renderer's public folder only contains libOpenCOR's glue (see downloadLibopencorJsIfNeeded()) and our - // Web app's .htaccess file, which are only needed by our Web app (OpenCOR uses our C++ API, see - // initialiseLocApi(), and isn't served by Apache), so there is no need to ship them. + // Note: our renderer's public folder only contains libOpenCOR's glue (see downloadLibopencorJsIfNeeded()), our + // CellDL runtime (see buildCellDLRuntime()), and our Web app's .htaccess file, which are only needed by our + // Web app (OpenCOR uses our C++ API, see initialiseLocApi(), includes our CellDL runtime, and isn't served + // by Apache), so there is no need to ship them. }, define: { + // Note: unlike OpenCOR's Web app, OpenCOR includes our CellDL runtime (see src/common/celldlRuntime.ts). + + __CELLDL_RUNTIME_BUNDLED__: JSON.stringify(true), + __CELLDL_RUNTIME_PATH__: JSON.stringify(''), __LIBOPENCOR_VERSION__: JSON.stringify(libopencorVersion), __OPENCOR_VERSION__: JSON.stringify(opencorVersion) }, envDir: path.join(import.meta.dirname, 'src/renderer'), + optimizeDeps: { + // Note: CellDL Editor is only loaded when needed, so Vite would only discover (and optimise) it and its + // dependencies at that point, before reloading our renderer, hence we ask Vite to optimise them upfront. + + include: ['@celldl/editor', '@celldl/rdf', '@physiomelinks/bg2cellml'], + + // Note: libCellML and Oxigraph locate their WASM file relative to their own URL, so they must not be optimised. + + exclude: ['libcellml.js', 'oxigraph'] + }, plugins: [ - // Note: this must be in sync with src/renderer/vite.config.ts, except for the download-libopencor-js plugin. + // Note: this must be in sync with src/renderer/vite.config.ts, except for the download-libopencor-js plugin and + // the scope-celldl-editor-css plugin (OpenCOR's Web app doesn't include our CellDL runtime). { // Plugin to download libOpenCOR's glue, so that our renderer can also be used as our Web app (e.g., at @@ -61,6 +85,7 @@ export default electronVite.defineConfig({ }, tailwindcssPlugin(), stripPrimeIconsFontFacePlugin(), + scopeCellDLEditorCssPlugin(), vuePlugin({ script: { fs: { @@ -75,6 +100,12 @@ export default electronVite.defineConfig({ }) ], publicDir: rendererPublicDir, + resolve: { + // Note: CellDL Editor depends on a specific version of Vue, which may therefore get installed alongside ours, yet + // there must only be one copy of Vue in our bundle. + + dedupe: ['vue'] + }, server: { fs: { allow: [path.join(import.meta.dirname, '..')] diff --git a/package.json b/package.json index 8f5d396a..3f4c23eb 100644 --- a/package.json +++ b/package.json @@ -23,7 +23,7 @@ "url": "git+https://github.com/opencor/webapp.git" }, "type": "module", - "version": "1.20261027.0", + "version": "1.20261031.0", "engines": { "bun": ">=1.2.0" }, @@ -53,28 +53,33 @@ "xxhash-wasm": "^1.1.0" }, "devDependencies": { - "@biomejs/biome": "^2.6.3", + "@biomejs/biome": "^2.6.4", + "@celldl/editor": "^0.20261029.0", + "@celldl/rdf": "^1.20260822.0", "@electron-toolkit/tsconfig": "^2.0.0", "@electron-toolkit/utils": "^4.0.0", - "@opencor/libopencor-types": "^1.20261020.0", + "@opencor/libopencor-types": "^1.20261029.0", + "@physiomelinks/bg2cellml": "^0.6.2", "@primeuix/themes": "2.0.3", "@primevue/auto-import-resolver": "4.5.5", "@tailwindcss/postcss": "^4.3.3", "@tailwindcss/vite": "^4.3.3", "@types/bun": "^1.4.4", - "@types/node": "^26.6.5", + "@types/node": "^26.6.6", "@vitejs/plugin-vue": "^6.0.10", "@vue/tsconfig": "^0.9.1", "@vueuse/core": "^15.0.0", "@wasm-fmt/clang-format": "^23.1.1", "autoprefixer": "^10.6.2", "cmake-js": "^8.0.0", - "electron": "^45.0.0", + "electron": "^45.2.1", "electron-builder": "^26.18.0", "electron-conf": "^1.3.0", "electron-updater": "^6.8.11", "electron-vite": "^6.0.0", + "libcellml.js": "^0.7.2", "node-addon-api": "^8.9.2", + "oxigraph": "^0.5.13", "postcss": "^8.5.32", "primeicons": "7.0.0", "primevue": "4.5.5", @@ -90,6 +95,6 @@ "uplot": "1.6.32", "vite": "^8.3.5", "vue": "^3.5.44", - "vue-tsc": "^3.3.13" + "vue-tsc": "^3.3.14" } } diff --git a/src/renderer/README.md b/src/renderer/README.md index 44c1f2f8..70155867 100644 --- a/src/renderer/README.md +++ b/src/renderer/README.md @@ -86,7 +86,11 @@ In addition, you will need to update the `locateFile` callback in `src/renderer/ ### Embedding the `@opencor/opencor` package -The `@opencor/opencor` package does **not** ship `libopencor.js`. At runtime, OpenCOR first tries to import it from your application, using the following URL (relative to your page's base URL): +The `@opencor/opencor` package does **not** ship libOpenCOR or CellDL Editor. Instead, OpenCOR loads them at runtime, either from your application or from `https://opencor.ws`. + +#### libOpenCOR + +At runtime, OpenCOR first tries to import `libopencor.js` from your application, using the following URL (relative to your page's base URL): ``` libopencor/downloads/wasm//libopencor.js @@ -99,6 +103,18 @@ where `` is the value of the `libopencorVersion` field in the package's If you would rather not fetch `libopencor.js` from `https://opencor.ws`, then you can self-host it by downloading it from `https://opencor.ws/libopencor/downloads/wasm//libopencor.js` and serving it, as a JavaScript file, from the above URL. Note that `worker-src` must still allow `blob:` since, on the Web, `libopencor.js` always spawns its pthread workers from blob URLs. Make sure to do this again whenever you update the `@opencor/opencor` package, since `` will then change. +#### CellDL Editor + +CellDL Editor is big, so OpenCOR only loads it the first time that a CellDL file is opened. It first tries to import it from your application, using the following URL (relative to your page's base URL): + +``` +celldl//celldl.js +``` + +where `` identifies the build of CellDL Editor used by your version of the `@opencor/opencor` package. If your application doesn't serve it, then OpenCOR imports it from `https://opencor.ws/app/celldl//celldl.js`, along with the other JavaScript and WASM files that it needs from the same folder. If your application uses a [Content Security Policy](https://developer.mozilla.org/en-US/docs/Web/HTTP/Guides/CSP), then this requires `script-src` and `connect-src` to allow `https://opencor.ws`. Also, whether or not CellDL Editor is imported from `https://opencor.ws`, `connect-src` must allow `data:` since CellDL Editor fetches one of its WASM files from a data URL. + +If you would rather not import CellDL Editor from `https://opencor.ws`, then you can self-host it by serving the `celldl//` folder of OpenCOR's Web app from the above URL. That folder can be found in the archive of OpenCOR's Web app that comes with the [release](https://github.com/opencor/webapp/releases) matching your version of the `@opencor/opencor` package. Make sure to do this again whenever you update the `@opencor/opencor` package, since `` may then change. + ## Usage OpenCOR accepts the following props: diff --git a/src/renderer/bun.lock b/src/renderer/bun.lock index 387e9299..8cee6744 100644 --- a/src/renderer/bun.lock +++ b/src/renderer/bun.lock @@ -5,18 +5,23 @@ "": { "name": "@opencor/opencor", "devDependencies": { - "@biomejs/biome": "^2.6.3", - "@opencor/libopencor-types": "^1.20261020.0", + "@biomejs/biome": "^2.6.4", + "@celldl/editor": "^0.20261029.0", + "@celldl/rdf": "^1.20260822.0", + "@opencor/libopencor-types": "^1.20261029.0", + "@physiomelinks/bg2cellml": "^0.6.2", "@primeuix/themes": "2.0.3", "@primevue/auto-import-resolver": "4.5.5", "@tailwindcss/postcss": "^4.3.3", "@tailwindcss/vite": "^4.3.3", "@types/bun": "^1.4.4", - "@types/node": "^26.6.5", + "@types/node": "^26.6.6", "@vitejs/plugin-vue": "^6.0.10", "@vue/tsconfig": "^0.9.1", "@vueuse/core": "^15.0.0", "autoprefixer": "^10.6.2", + "libcellml.js": "^0.7.2", + 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archive and to simulate it." + }, + { + "type": "improved", + "description": "Switching views using the mouse wheel or a trackpad now switches only one view per gesture." + }, + { + "type": "improved", + "description": "Blocking messages now show and hide without any transition, and their progress bar spans their full width." + }, + { "type": "improved", "description": "Upgraded libOpenCOR to version 1.20261029.0." } + ] + }, { "version": "1.20261027.0", "changes": [ diff --git a/src/renderer/index.html b/src/renderer/index.html index d5c52108..df3af1f4 100644 --- a/src/renderer/index.html +++ b/src/renderer/index.html @@ -7,7 +7,7 @@ + content="default-src 'self'; connect-src * data:; script-src 'unsafe-eval'; script-src-elem 'self' https://apis.google.com https://cdn.jsdelivr.net https://fastly.jsdelivr.net https://gcore.jsdelivr.net https://cors-proxy.opencor.workers.dev; worker-src 'self' blob:; font-src 'self' data:; style-src 'self' 'unsafe-inline'; frame-src 'self' https://opencorapp.firebaseapp.com; img-src 'self' blob: data:" /> diff --git a/src/renderer/src/components/views/CellDLEditorView.vue b/src/renderer/src/components/views/CellDLEditorView.vue new file mode 100644 index 00000000..b50077e5 --- /dev/null +++ b/src/renderer/src/components/views/CellDLEditorView.vue @@ -0,0 +1,199 @@ + + + diff --git a/src/renderer/src/components/views/SimulationExperimentInteractiveView.vue b/src/renderer/src/components/views/SimulationExperimentInteractiveView.vue index 39d5fe19..e7e82771 100644 --- a/src/renderer/src/components/views/SimulationExperimentInteractiveView.vue +++ b/src/renderer/src/components/views/SimulationExperimentInteractiveView.vue @@ -1,5 +1,5 @@