The transform for vox to world is not applied correctly when saving .tck files using scil_local_tracking. This is likely due to a bug in scilpy.tracking.utils.save_tractogram when affine matrix is applied.
As a workaround, for interoperability with mrtrix, you can save as trk and then use scil_tractogram_convert to convert to tck.
The transform for vox to world is not applied correctly when saving .tck files using
scil_local_tracking. This is likely due to a bug inscilpy.tracking.utils.save_tractogramwhen affine matrix is applied.As a workaround, for interoperability with mrtrix, you can save as trk and then use
scil_tractogram_convertto convert to tck.