Issues

• CI: test_info_gene is flaky — exact-match assertion over best-effort UniProt/NCBI enrichment

  scverse/gget#267 · Filter by author Elarwei001 opened on Jul 12, 2026
  1

• CI: test_cellxgene_adata fails — cellxgene-census AnnData now exposes a layers entry (live-data drift)

  scverse/gget#265 · Filter by author Elarwei001 opened on Jul 8, 2026

• gget setup alphafold / gget alphafold break against the current deepmind/alphafold main branch

  scverse/gget#264 · Filter by author Elarwei001 opened on Jul 7, 2026

• gget archs4 uses the legacy maayanlab.cloud endpoint; ARCHS4 has moved to archs4.org (evaluate migration, low priority)

  scverse/gget#254 · Filter by author Elarwei001 opened on Jun 26, 2026

• Replace cellxgene-census

  scverse/gget#218 · Filter by author Zethson opened on Jun 12, 2026
  1

• Add typing & type checking

  scverse/gget#216 · Filter by author Zethson opened on Jun 11, 2026
  3

• gget virus: add function to only download new sequences

  enhancement
  scverse/gget#204 · Filter by author ferbsx opened on Feb 5, 2026

• Support core_nt database in blast module

  enhancement
  scverse/gget#188 · Filter by author mikemc opened on Nov 20, 2025

• gget seq ENST... gets genomic sequences (exons+introns) instead of transcript sequences

  scverse/gget#187 · Filter by author a-dna-n opened on Oct 16, 2025

• gget ref assembly report

  enhancement
  scverse/gget#179 · Filter by author nh13 opened on May 16, 2025
  1

• Support download of PDBx/mmCIF format files in gget pdb (legacy PDB format will be phased out)

  enhancement
  scverse/gget#178 · Filter by author lauraluebbert opened on May 1, 2025

• gget opentargets -r diseases

  scverse/gget#168 · Filter by author adeslatt opened on Nov 18, 2024
  1

• Add modules to interface with new projects from the Enrichr/Archs4 group

  enhancement
  scverse/gget#164 · Filter by author lauraluebbert opened on Oct 2, 2024
  1

• Alliance Genome Resources

  enhancement
  scverse/gget#162 · Filter by author lakigigar opened on Sep 29, 2024

• Pineapple module to download bio-imaging data

  enhancement
  scverse/gget#161 · Filter by author lauraluebbert opened on Sep 27, 2024

• ENCODE downloader

  enhancement
  scverse/gget#151 · Filter by author abearab opened on Jul 6, 2024
  3

• Hello thanks for the wonderful package. Can you please add support for this https://www.gsea-msigdb.org/gsea/msigdb/ Especially for getting gene sets

  enhancement
  scverse/gget#139 · Filter by author cakeinspace opened on Jun 13, 2024

• Module to download MitoCarta3 database

  enhancement
  scverse/gget#118 · Filter by author lauraluebbert opened on Jan 9, 2024

• Add module for reactome

  enhancement
  scverse/gget#114 · Filter by author lauraluebbert opened on Nov 29, 2023

• GENCODE GTFs+FASTAs

  enhancement
  scverse/gget#73 · Filter by author Yenaled opened on Apr 7, 2023

• gget blast can not restrict by taxonomy

  enhancement
  scverse/gget#71 · Filter by author abearab opened on Apr 5, 2023

• Ability to match parameters of BLAST as per the web app

  enhancement
  scverse/gget#58 · Filter by author vkullu opened on Jan 21, 2023
  2

• [gget_alphafold] - Feature Request - Add an option to submit a MSA instead of a protein sequence

  enhancement
  scverse/gget#52 · Filter by author kchennen opened on Jan 9, 2023
  1

• Request databases to be added to gget

  enhancement
  scverse/gget#19 · Filter by author lauraluebbert opened on Jun 13, 2022
  3

• Add feature to fetch UCSC IDs

  enhancement
  scverse/gget#18 · Filter by author Joaodemeirelles opened on Jun 10, 2022