Issues

• --fraction-missing-file vs pruning question

  BenoitMorel/AleRax#36 · Filter by author MaselLab-archive opened on Oct 24, 2026
  5

• topological constraints for species-tree search (--species-constraints)

  BenoitMorel/AleRax#34 · Filter by author MaselLab-archive opened on Sep 29, 2026
  12

• Slow Gene Tree Reconciliation for Large Gene Family (4000+ Members)

  BenoitMorel/AleRax#29 · Filter by author linweiliarchaea opened on Feb 1, 2026
  16

• ../ext/GeneRaxCore/ext/coraxlib/cmake/simd.cmake :: -march=native may introduce exec failure

  BenoitMorel/AleRax#28 · Filter by author EricDeveaud opened on Jan 23, 2026

• Suitability for Genes with Several Origins

  BenoitMorel/AleRax#27 · Filter by author jb16159 opened on Nov 13, 2025
  2

• Inquiry on conda version

  BenoitMorel/AleRax#26 · Filter by author LanSabb opened on Aug 28, 2025

• Questions on usecase

  BenoitMorel/AleRax#25 · Filter by author priyanshusingh1301 opened on Jul 29, 2025
  1

• species tree and gene tree construction

  BenoitMorel/AleRax#21 · Filter by author Zhaolu927 opened on May 31, 2025
  5

• Indirect transfers to the past

  BenoitMorel/AleRax#19 · Filter by author JulianVosseberg opened on Mar 25, 2025
  1

• Tests fail due to change in parameters

  BenoitMorel/AleRax#6 · Filter by author cwant opened on May 23, 2024
  1

• Error message. The newick string should end with a semicolon.

  BenoitMorel/AleRax#5 · Filter by author Mia1349 opened on Apr 12, 2024
  3

• Segfault in libpthread

  BenoitMorel/AleRax#4 · Filter by author delehef opened on Mar 12, 2024
  1