Issues

• repeat(::BioSequence, -1) should throw

  documentationenhancement
  BioJulia/BioSequences.jl#353 · Filter by author jakobnissen opened on Sep 4, 2026

• Review completeness of copying/indel methods

  enhancementfeature request
  BioJulia/BioSequences.jl#352 · Filter by author jakobnissen opened on Sep 4, 2026

• Breaking changes for v4

  BioJulia/BioSequences.jl#351 · Filter by author jakobnissen opened on Sep 3, 2026
  1

• Back LongSequence and LongSubSeq by RefVector

  BioJulia/BioSequences.jl#349 · Filter by author jakobnissen opened on Aug 30, 2026
  1

• We should not have GeneticCode <: AbstractDict{UInt64, AminoAcid}

  breaking
  BioJulia/BioSequences.jl#347 · Filter by author jakobnissen opened on Aug 29, 2026
  1

• Move the recoding trait system from Kmers into BioSequences

  BioJulia/BioSequences.jl#333 · Filter by author jakobnissen opened on Jun 21, 2025

• Discussion: Make LongSequence fixed-length?

  breaking
  BioJulia/BioSequences.jl#329 · Filter by author jakobnissen opened on Dec 22, 2024
  10

• Document BioSequence interface(s)

  BioJulia/BioSequences.jl#328 · Filter by author kescobo opened on Oct 28, 2024
  1

  

• Remove convert for biosequences

  breaking
  BioJulia/BioSequences.jl#321 · Filter by author jakobnissen opened on Oct 23, 2024
  3

• Hide inner constructors of objects in this package

  breaking
  BioJulia/BioSequences.jl#318 · Filter by author jakobnissen opened on Oct 21, 2024
  1

• How should one search for ORFs?

  BioJulia/BioSequences.jl#299 · Filter by author jakobnissen opened on Oct 23, 2023
  5

• Create and export a generic test biosequence

  BioJulia/BioSequences.jl#296 · Filter by author jakobnissen opened on Oct 22, 2023

• Consider making Random a weak dep

  breakingenhancement
  BioJulia/BioSequences.jl#289 · Filter by author jakobnissen opened on Oct 15, 2023
  2

• Translation Issue arising from isambiguous(DNA_Gap) == false

  BioJulia/BioSequences.jl#277 · Filter by author chelate opened on Jun 22, 2023
  2

• New Feature: Molecular weight calculations for BioSequences

  BioJulia/BioSequences.jl#262 · Filter by author benjaminlozanow opened on Jan 12, 2023
  10

• CenteredSequence{A} type for comparing short reads padding with AA_Gap

  feature request
  BioJulia/BioSequences.jl#247 · Filter by author gszep opened on Jul 8, 2022
  8

• Design of hash(::BioSequence). What to do?

  breaking
  BioJulia/BioSequences.jl#243 · Filter by author jakobnissen opened on Jul 5, 2022
  19

• Add tryparse(::BioSequence, s::AbstractString) or similar

  BioJulia/BioSequences.jl#224 · Filter by author jakobnissen opened on May 5, 2022
  3

• [FR] add Query versions for Base.count

  BioJulia/BioSequences.jl#223 · Filter by author BeastyBlacksmith opened on Mar 24, 2022

• Document seqmatrix and majorityvote

  BioJulia/BioSequences.jl#143 · Filter by author jakobnissen opened on Mar 11, 2021

• PFM for amino acid sequences?

  BioJulia/BioSequences.jl#137 · Filter by author fcharih opened on Mar 10, 2021
  1

• Implement broadcasting for biosequences

  BioJulia/BioSequences.jl#135 · Filter by author jakobnissen opened on Feb 28, 2021
  7

• Demultiplexer scales badly with Hamming distance

  BioJulia/BioSequences.jl#103 · Filter by author tp2750 opened on Jun 1, 2020

• BioSequences.RE.RegexMatch behaves nothing like Base.RegexMatch

  BioJulia/BioSequences.jl#45 · Filter by author estragon0 opened on Sep 7, 2018
  1