Repository navigation

A preliminary implementation of partition covariance [WIP] - #169

Merged

The9Cat merged 92 commits into

develfrom

covariance

Nov 18, 2025

Merged

A preliminary implementation of partition covariance [WIP]#169
The9Cat merged 92 commits into
develfrom
covariance

Commits on Oct 18, 2025
- A preliminary implementation of partition covariance
  Martin D. Weinberg
  committed
  080aa44
Commits on Oct 19, 2025
- Cleanup up bindings for new variance members
  Martin D. Weinberg
  committed
  d8d04c5
- Implementation of HDF5 writing
  Martin D. Weinberg
  committed
  5de9061
- Fix storage assignment mistake in covariance arrays
  Martin D. Weinberg
  committed
  8db952b
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  14da31a
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  8433db5
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  9f5b52c
- Minor updates following Copilot review
  Martin D. Weinberg
  committed
  6223a58
- Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
  Martin D. Weinberg
  committed
  49c9880
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  8820300
- Change square to triangular allocation for storage efficiency
  Martin D. Weinberg
  committed
  239aa5e
- Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
  Martin D. Weinberg
  committed
  4243529
- More dimensioning consistency fixes
  Martin D. Weinberg
  committed
  0afaae3
- Implementation of the CovarianceReader
  Martin D. Weinberg
  committed
  2054397
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  fef0ebd
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  b82d305
- Some docstring corrections
  Martin D. Weinberg
  committed
  d16eddf
- Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
  Martin D. Weinberg
  committed
  3f044a3
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  e4833ff
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  8b59de3
- More minor fixes
  Martin D. Weinberg
  committed
  0cc2ba5
- Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
  Martin D. Weinberg
  committed
  e2bbd32
- Data was not copied to CovarianceReader internal array
  Martin D. Weinberg
  committed
  f5d839d
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  7025a62
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  028149c
- Generalize type detection for covariance geometry
  Martin D. Weinberg
  committed
  3d6644e
- Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
  Martin D. Weinberg
  committed
  af41ac9
- More minor fixes based on a Copilot review
  Martin D. Weinberg
  committed
  c6e4921
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  1d0b5d9
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  3a178a7
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  57656ed
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  b9d4122
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  2846454
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  50dc861
- Update exputil/EmpCylSL.cc
  
  The9Cat
  and
  Copilot
  authored
  cca94d8
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  a336cda
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  4ce5ee3
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  15b004f
- More minor fixes based on a Copilot review
  Martin D. Weinberg
  committed
  2406860
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  b44d8ba
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  044e9e4
Commits on Oct 20, 2025
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  c18ea29
- Update include/EmpCylSL.H
  
  The9Cat
  and
  Copilot
  authored
  ad8a5d4
- Update expui/BiorthBasis.H
  
  The9Cat
  and
  Copilot
  authored
  32b9a12
- Simplify pcavar computation by separating the computation from expcoef
  Martin D. Weinberg
  committed
  4accfdf
- Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
  Martin D. Weinberg
  committed
  07c44c2
- Use Eigen reduction for totalCounts accumulation
  Martin D. Weinberg
  committed
  6b4ae53
- Remove default value for pybind11 overloads for covariance access
  Martin D. Weinberg
  committed
  b0a0cbb
- Update expui/BiorthBasis.cc
  
  The9Cat
  and
  Copilot
  authored
  ae7941f
- Added particle index to accumulate() members. Fixed Cylindrical calls with pcavar
  Martin D. Weinberg
  committed
  e4af5bf
- Update pyEXP/BasisWrappers.cc
  
  The9Cat
  and
  Copilot
  authored
  18c4c26
- Minor formatting changes
  Martin D. Weinberg
  committed
  d9c68c9
Commits on Oct 21, 2025
- Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
  Martin D. Weinberg
  committed
  3a4d41a
Commits on Oct 24, 2025
- Implemented complex covariance with the option of setting float4 complex values
  Martin D. Weinberg
  committed
  e00e5be
- Some minor logic fixes for EmpCylSL
  Martin D. Weinberg
  committed
  cfa363b
Commits on Oct 25, 2025
- Remove an overlooked debug line
  Martin D. Weinberg
  committed
  feb7a16
Commits on Oct 26, 2025
- Implemente HDF5 compression
  Martin D. Weinberg
  committed
  1da2921
- Remove debug lines
  Martin D. Weinberg
  committed
  c37ceaa
- Decreased granularity of HDF5 stanzas to allow the compressor to be efficient
  Martin D. Weinberg
  committed
  ed50705
- Removed some debugging output; checked against original version
  Martin D. Weinberg
  committed
  e8ac21d
- Restore 1MB as the default chunk size
  Martin D. Weinberg
  committed
  7bdd491
- Added Python doc strings
  Martin D. Weinberg
  committed
  d2b1ecc
Commits on Oct 27, 2025
- Fixed loop misorder in complex covariance accumulation
  Martin D. Weinberg
  committed
  2c91980
Commits on Oct 28, 2025
- Remove a noisy DEBUG line
  Martin D. Weinberg
  committed
  4dc27cc
Commits on Oct 29, 2025
- More debug output removal
  Martin D. Weinberg
  committed
  f43045e
Commits on Oct 30, 2025
- Remove some unused Cylindrical parameters and update the attribute output
  Martin D. Weinberg
  committed
  e4e032f
Commits on Nov 2, 2025
- Add KD density estimation utility
  Martin D. Weinberg
  committed
  968090a
- Fixed a few errors in the PSPhdf5 version of the ParticleReader
  Martin D. Weinberg
  committed
  cfad2a5
Commits on Nov 3, 2025
- Added defaults for 'verbose'
  Martin D. Weinberg
  committed
  ffd89df
- Fix override binding for KDdensity::getDensityAtPoint()
  Martin D. Weinberg
  committed
  10ad900
- Fix up restarts of ParticleReader to restore initial file
  Martin D. Weinberg
  committed
  fcf4fc2
- Compute KDE density in real units; allow verbose flag to toggle restart message
  Martin D. Weinberg
  committed
  f4db58d
Commits on Nov 4, 2025
- Add sech2 toggle for gendisk
  Martin D. Weinberg
  committed
  5ca9135
- Change to keep gcc 15.x happy
  Martin D. Weinberg
  committed
  001a701
Commits on Nov 5, 2025
- Fix sampT default for Cylindrical
  Martin D. Weinberg
  committed
  776f7fe
- Merge branch 'covariance' of github.com:EXP-code/EXP into covariance
  Martin D. Weinberg
  committed
  729596d
- Added enableCoefCovariance() member function to override the 'pcavar' and 'subsamp' config tags. Also, double checked 'subsamp' logic to enforce nonzero-sized samples.
  Martin D. Weinberg
  committed
  f94c32a
Commits on Nov 6, 2025
- Fix typo in enableCoefCovariance for Spherical
  Martin D. Weinberg
  committed
  240d69c
- Restore the original default of TRUE for ENABLE_UTILS to allow the EXP unit tests to run more fully
  Martin D. Weinberg
  committed
  227be01
Commits on Nov 10, 2025
- Remove some cruft
  Martin D. Weinberg
  committed
  8cb1426
Commits on Nov 11, 2025
- Fixed halo covariance MPI type mistake
  Martin D. Weinberg
  committed
  720d9ae
Commits on Nov 13, 2025
- Added covariance computation for the Cube
  Martin D. Weinberg
  committed
  ccd29be
- Missing stanza for deducing Cube coefficients
  Martin D. Weinberg
  committed
  e823e4d
- More Cube updates for BiorthBasis
  Martin D. Weinberg
  committed
  e8da520
- Comment in typo only [no CI]
  Martin D. Weinberg
  committed
  a7cda15
Commits on Nov 14, 2025
- Added pyEXP bindings for index helpers for Cube covariance
  Martin D. Weinberg
  committed
  b0ac36c
- Expose index manipulators from Cube basis in pyEXP
  Martin D. Weinberg
  committed
  5b2ec35
- Fix some minor doc-string typos
  Martin D. Weinberg
  committed
  5081b16
Commits on Nov 16, 2025
- Typo in index bounds fixed
  Martin D. Weinberg
  committed
  b049baf
- Remove unused loop variable
  Martin D. Weinberg
  committed
  af32999
- Added covariance toggle to Cube
  Martin D. Weinberg
  committed
  f3e41ae
Commits on Nov 18, 2025
- Merge branch 'devel' into covariance
  The9Cat
  authored
  0dd648d

Commits

Commits on Oct 18, 2025

Commits on Oct 19, 2025

Commits on Oct 20, 2025

Commits on Oct 21, 2025

Commits on Oct 24, 2025

Commits on Oct 25, 2025

Commits on Oct 26, 2025

Commits on Oct 27, 2025

Commits on Oct 28, 2025

Commits on Oct 29, 2025

Commits on Oct 30, 2025

Commits on Nov 2, 2025

Commits on Nov 3, 2025

Commits on Nov 4, 2025

Commits on Nov 5, 2025

Commits on Nov 6, 2025

Commits on Nov 10, 2025

Commits on Nov 11, 2025

Commits on Nov 13, 2025

Commits on Nov 14, 2025

Commits on Nov 16, 2025

Commits on Nov 18, 2025