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GenSpectrum Loculus Configuration

The recommended setup for Loculus is based on Kubernetes and tutorials are available on the Loculus homepage (e.g. this one for a local setup and this one using k3d and nginx).

If Kubernetes is not an option, you may explore the option of using a Docker Compose-based setup. This repository provides a small Docker Compose reference for running Loculus with RSV A and H5N1. It includes ingestion, preprocessing, SILO, LAPIS, Keycloak and PostgreSQL.

Start

docker compose up -d

The default local endpoints are:

Service URL
Website http://localhost:3000
Backend http://localhost:8079
LAPIS gateway http://localhost:8080
Keycloak http://localhost:8083

Keycloak admin credentials are admin:admin. Ingest starts automatically and repeats every two hours.

Configuration

Runtime configuration lives under config/. Copy the optional environment example to change the Loculus image version, ports, or the NCBI API key:

cp .env.example .env

Stop

docker compose down
docker compose down -v

The second command also removes all local data.

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