Issues

• Problem with parallelization

  Genentech/Isosceles#21 · Filter by author AleCali4 opened on May 19, 2026

• Feature request: intra-BAM parallelization in bam_to_read_structures and bam_to_tcc

  Genentech/Isosceles#20 · Filter by author amarinderthind opened on Apr 16, 2026

• Compatibility with scnanoseq and others

  Genentech/Isosceles#18 · Filter by author josiegleeson opened on Oct 14, 2025

• Error with using singularity

  Genentech/Isosceles#17 · Filter by author AdeyeyeUSA opened on Jul 16, 2025

• Low percentage of reads assigned to provided transcript set

  Genentech/Isosceles#16 · Filter by author wongjy2 opened on Jul 6, 2025

• Data preparation for PacBio MAS-Isoseq

  Genentech/Isosceles#15 · Filter by author hwismer opened on Jun 23, 2025

• tcc_to_gene SparseArray too many groups (matrix of sums will be too big)

  Genentech/Isosceles#14 · Filter by author zihian opened on May 5, 2025

• Comparing conditions in bulk data

  Genentech/Isosceles#13 · Filter by author Appenzee opened on Feb 5, 2025
  

• Merge transcript quantification reseults (RangedSummarizedExperiment) of multiple samples

  Genentech/Isosceles#12 · Filter by author WhaleGe opened on Dec 31, 2024
  

• Best Step for Running SQANTI3 Filtering on Isoforms

  Genentech/Isosceles#11 · Filter by author skudashev opened on Oct 28, 2024
  1

• Read to Isoforms Mapping

  Genentech/Isosceles#10 · Filter by author shizhuom opened on Oct 21, 2024
  1

• export_gtf returns only exons

  Genentech/Isosceles#8 · Filter by author sbresnahan opened on Sep 30, 2024
  2

  

• prepare_transcripts range width limit error

  Genentech/Isosceles#7 · Filter by author sbresnahan opened on Sep 28, 2024
  2

  

• Alternatives for DEXSeq DEU test

  Genentech/Isosceles#6 · Filter by author mcortes-lopez opened on Mar 3, 2024
  1

• find_isoswitch - from wf-epi2me single-cell transcript matrix

  Genentech/Isosceles#5 · Filter by author reJELIN opened on Feb 12, 2024
  5

• prepare_bam_transcripts.R duplication in hash id

  Genentech/Isosceles#2 · Filter by author lingminhao opened on Jan 2, 2024
  8