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Update installation instructions for phase1b - #156

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closes #152 thank you @RossomaS

@audreyyeoCH audreyyeoCH self-assigned this Oct 19, 2026
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Code Coverage Summary

Filename                 Stmts    Miss  Cover    Missing
---------------------  -------  ------  -------  -----------
R/betadiff.R                78       0  100.00%
R/boundsPostprob.R          44       0  100.00%
R/boundsPredprob.R          56       1  98.21%   83
R/dbetabinom.R              99       3  96.97%   32, 62, 154
R/oc2.R                    162     162  0.00%    93-326
R/oc3.R                    146     146  0.00%    91-308
R/ocPostprob.R             117       0  100.00%
R/ocPostprobDist.R         122       0  100.00%
R/ocPredprob.R             205       0  100.00%
R/ocPredprobDist.R         257       5  98.05%   363-367
R/ocRctPostprobDist.R      174       0  100.00%
R/ocRctPredprobDist.R      302       0  100.00%
R/plotBeta.R                97       9  90.72%   124-132
R/plotBounds.R              83      83  0.00%    42-130
R/plotDecision.R            73       0  100.00%
R/plotOc.R                  55       2  96.36%   99-100
R/postprob.R                34       1  97.06%   113
R/postprobDist.R            77       1  98.70%   204
R/predprob.R                36       0  100.00%
R/predprobDist.R           140       1  99.29%   269
R/runShinyPhase1b.R          4       4  0.00%    8-13
R/sumBetaDiff.R             80      15  81.25%   102-120
R/sumTable.R                36       0  100.00%
TOTAL                     2477     433  82.52%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: 4338e0c

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

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Unit Test Performance Difference

Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
ocPredprob 💔 $205.75$ $+9.53$ $0$ $0$ $0$ $0$
ocPredprobDist 💔 $95.96$ $+3.00$ $0$ $0$ $0$ $0$
ocRctPredprobDist 💔 $28.95$ $+1.49$ $0$ $0$ $0$ $0$
plotOc 💔 $213.19$ $+4.97$ $0$ $0$ $0$ $0$
predprobDist 💚 $40.01$ $-14.41$ $0$ $0$ $0$ $0$
Additional test case details
Test Suite $Status$ Time on main $±Time$ Test Case
ocPostprob 💚 $3.13$ $-1.89$ h_get_looks_together_with_h_get_distance_always_gives_unique_looks
ocPredprob 💔 $202.91$ $+9.33$ ocPredprob_correctly_shows_maximum_sample_size_when_no_decision_reached
ocPredprobDist 💔 $61.58$ $+2.04$ ocPredprobDist_gives_higher_PrFutility_with_more_futility_looks
plotOc 💔 $56.55$ $+1.31$ h_get_dataframe_oc_gives_correct_results_for_ocPredprobDist_when_relativeDelta_FALSE
plotOc 💔 $48.83$ $+1.13$ h_get_dataframe_oc_gives_correct_results_for_ocPredprobDist_when_relativeDelta_TRUE
plotOc 💔 $104.74$ $+2.36$ plotOc_gives_expected_results_for_ocPredprobDist_with_different_relativeDelta_status
predprobDist 💚 $11.30$ $-3.31$ h_predprobdist_gives_higher_predictive_probability_when_thetaT_is_lower
predprobDist 💚 $16.20$ $-7.56$ predprobDist_gives_higher_predictive_probability_when_thetaT_is_lower_in_a_single_arm_trial
predprobDist 💚 $7.06$ $-2.64$ predprobDist_gives_the_correct_results_in_a_two_arm_study

Results for commit bc27dde

♻️ This comment has been updated with latest results.

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[Bug]: deprecated command

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