Issues

• recommended filtering of mod sites for RNA004

  GoekeLab/m6anet#205 · Filter by author sparthib opened on Sep 15, 2026

• RNA004 f5c with 5-mer or 9-mer model?

  GoekeLab/m6anet#204 · Filter by author SchwarzMarek opened on Feb 4, 2026

• m6anet results compared to modkit

  GoekeLab/m6anet#202 · Filter by author esh97 opened on Sep 8, 2025
  1

• Question about training models for other motifs in Arabidopsis thaliana

  GoekeLab/m6anet#201 · Filter by author maxdayu opened on Aug 17, 2025
  1

• m6anet dataprep does not generate output from nanopolish eventalign input

  GoekeLab/m6anet#199 · Filter by author rhliii opened on Jul 24, 2025
  3

• How is the "probability_modified" from the "data.site_proba" calculated for each site

  GoekeLab/m6anet#198 · Filter by author Tesdhi opened on Jul 16, 2025
  1

• Guidance on sample read depth for m6A comparisons across samples

  GoekeLab/m6anet#197 · Filter by author hannalee809 opened on Jun 11, 2025
  1

• Is fastq file converted from "Dorado" unsorted bam by "samtools fastq" suitable for m6anet

  GoekeLab/m6anet#196 · Filter by author Tesdhi opened on Apr 24, 2025
  2

• training dataset

  GoekeLab/m6anet#195 · Filter by author wawpaopao opened on Mar 27, 2025

• output of positions in transcript truncated

  GoekeLab/m6anet#194 · Filter by author sdietmann opened on Mar 19, 2025
  2

• m6a individual site detection for RNA004 model

  GoekeLab/m6anet#192 · Filter by author gjandebeur opened on Mar 12, 2025
  1

• m6A Detection for Novel Fusions

  GoekeLab/m6anet#191 · Filter by author hannalee809 opened on Feb 28, 2025
  4

• Optimising dataprep for large files

  GoekeLab/m6anet#190 · Filter by author sophiewharrie opened on Feb 17, 2025
  3

• retrain an Arabidopsis model based on vir1 mutants and VIRc

  GoekeLab/m6anet#184 · Filter by author hanyishui0612 opened on Dec 30, 2024
  3

• how to get the site-level labels of the arabidopsis

  GoekeLab/m6anet#180 · Filter by author hanyishui0612 opened on Dec 2, 2024
  3

• Question about --read_proba_threshold in m6anet inference

  GoekeLab/m6anet#177 · Filter by author cxy-26 opened on Oct 30, 2024
  5

• partition in nanopolish eventalign output

  GoekeLab/m6anet#176 · Filter by author baibhav-bioinfo opened on Oct 20, 2024
  24

• Output does not include 3' ends of reads

  GoekeLab/m6anet#171 · Filter by author esh97 opened on Aug 13, 2024
  3

• Arabidopsis VIRC instead of col0 (wild type)

  GoekeLab/m6anet#166 · Filter by author haotianteng opened on Jun 2, 2024
  4

• Issues with Read Selection

  GoekeLab/m6anet#163 · Filter by author AKjhu opened on Apr 12, 2024
  2

• m6anet, eventalign, galaxy

  GoekeLab/m6anet#155 · Filter by author mocherry opened on Mar 6, 2024
  9

• Question about the PCA in the paper

  GoekeLab/m6anet#149 · Filter by author huawen-poppy opened on Jan 27, 2024

• Arabidopsis m6anet model for RNA004

  GoekeLab/m6anet#145 · Filter by author Papareddy opened on Dec 12, 2023
  2

• Error: Single positional indexer is out of bounds error

  GoekeLab/m6anet#138 · Filter by author gsukrit opened on Oct 28, 2023
  1

• Questions about the m6anet inference results

  GoekeLab/m6anet#133 · Filter by author mumdark opened on Sep 16, 2023
  3