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@GreshamLab

The Gresham Lab at the NYU Center for Genomics and System Biology

Github Organization for all Gresham Lab Code

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  1. flow flow Public

    Scripts for processing flow cytometry and FACS data

    R 3 8

  2. vivaldi vivaldi Public

    An R package for studying viral genetic diversity using vcf files

    R 3 1

  3. jtb_2023_code jtb_2023_code Public

    Python 2

  4. polyadenylation_cerevisiae polyadenylation_cerevisiae Public

    Polyadenylation project on S. cerevisiae

    Shell 2

  5. bartools bartools Public

    tools for analyzing barseq data

    R 1

  6. labtools labtools Public

    useful R functions for data analysis

    R 1 1

Repositories

Showing 10 of 39 repositories
  • git-practice Public
    GreshamLab/git-practice's past year of commit activity
    0 0 0 0 Updated Oct 2, 2026
  • Agrawal_single_cell_eqtl_cell_cycle Public

    Single cell eQTL mapping and cell cycle analysis for the paper

    GreshamLab/Agrawal_single_cell_eqtl_cell_cycle's past year of commit activity
    Python 0 0 0 1 Updated Oct 1, 2026
  • Proteome_Rim15_Quiescence Public
    GreshamLab/Proteome_Rim15_Quiescence's past year of commit activity
    HTML 1 1 0 0 Updated Sep 22, 2026
  • jtb_2023_code Public
    GreshamLab/jtb_2023_code's past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 19, 2026
  • SingleCell_cerevisiae Public

    Single cell RNA-sequencing on S. cerevisiae

    GreshamLab/SingleCell_cerevisiae's past year of commit activity
    R 1 MIT 0 0 1 Updated Jul 28, 2026
  • Saaz_ScERG11CNV Public Forked from saaz1291/ScERG11CNV

    Codes for figures and analysis, and some input data, for my research on the experimental evolution of ERG11 copy number variants in S cerevisiae under fluconazole selection

    GreshamLab/Saaz_ScERG11CNV's past year of commit activity
    R 0 MIT 1 0 0 Updated Jul 8, 2026
  • sc_self_supervised Public

    Self Supervised Tools for Single Cell Data

    GreshamLab/sc_self_supervised's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 29, 2026
  • vivaldi Public

    An R package for studying viral genetic diversity using vcf files

    GreshamLab/vivaldi's past year of commit activity
    R 3 1 0 0 Updated Jun 16, 2026
  • bartools Public

    tools for analyzing barseq data

    GreshamLab/bartools's past year of commit activity
    R 1 0 0 0 Updated Jun 16, 2026
  • vignettes Public

    A collection of vignettes describing common workflows in the Gresham lab

    GreshamLab/vignettes's past year of commit activity
    Python 1 MIT 0 0 0 Updated May 27, 2026
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