This is the Johnson's lab in Johns Hopkins University who developed the NonEquilibrium Reaction-Diffusion Self-assembly Simulator (NERDSS).
JohnsonBiophysicsLab
- 5 followers
- United States of America
- https://sites.krieger.jhu.edu/johnson-lab/
- margaret.johnson@jhu.edu
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ionerdss
ionerdss PublicForked from mjohn218/ionerdss
Transforming macromolecular structures to self-assembly simulations
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NERDSS
NERDSS PublicForked from mjohn218/NERDSS
NonEquilibrium Reaction-Diffusion Self-assembly Simulator
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DNA_protein_models
DNA_protein_models PublicModels to simulate protein binding to specific and nonspceific DNA, forming protein dimers and oligomers.
Jupyter Notebook 1
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NERDSS_upgrade
NERDSS_upgrade PublicForked from JohnsonBiophysicsLab/NERDSS
Summer 2026 upgrade of NERDSS
C++ 1
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simulariumio
simulariumio PublicForked from simularium/simulariumio
Python package that converts simulation outputs to the format consumed by the Simularium viewer website
Python
Repositories
- SLIMED_dev Public Forked from JohnsonBiophysicsLab/SLIMED
Development repo for Subdivision-limit membrane dynamics
- ionerdss Public Forked from mjohn218/ionerdss
Transforming macromolecular structures to self-assembly simulations
- membrane-selects-symmetric-growth-si Public
This repository contains the supporting source code for graphing, analytical, and numerical calculations related to the continuum membrane model by Dr. Margaret E Johnson lab, JHU.
- densityVolume1D Public
- munc13-cluster Public
model of recruitment and clustering on the membrane. Python solves ODES, samples parameters to optimize loss function, agreement to experiment.
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