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release: v0.13.1 - #72

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Roy-Kid merged 3 commits into
MolCrafts:masterfrom
Roy-Kid:release/v0.13.1
Aug 13, 2026
Merged

Roy-Kid merged 3 commits into
MolCrafts:masterfrom
Roy-Kid:release/v0.13.1

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@Roy-Kid Roy-Kid commented Aug 13, 2026

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Summary

  • Patch 0.13.0 → 0.13.1, tracking published molrs 0.13.1 (>=0.13.1,<0.14).
  • Frame.meta is dict-like (molrs FrameMeta): frame.meta["timestep"] = 0.
  • mp.io.write_smarts(mol, atom) — local environment SMARTS.
  • UnitSystem: k_B, openmm preset, factor(source, target).
  • Neighbors call sites use query_point_indices / point_indices / dist_sq (the 0.13.1 table).
  • Field constants stay plain strings so update(**annotation) and d["type"] keep working.

Test plan

  • local pre-commit ≡ CI + /mol:ship push
    • tox -e lint
    • tox -e py / pytest tests/ (1624 passed) against molcrafts-molrs 0.13.1
  • CI on the PR (must be green before merge)

- Single-pass trajectory dipole accumulation (O(n_frames) memory)
- Routes: einstein-helfand, green-kubo (prefer velocity current), eq28, eq30
- Re-export DielectricSusceptibility; LinkedCell -> Neighbors for molrs 0.13
Call DipoleRateCross / DebyeRelaxation / spectrum Fits in molrs; share
one PACF raw between EH and dipole-autocorrelation; recycle unwrap
buffers on the stream path.
@Roy-Kid
Roy-Kid merged commit ada177f into MolCrafts:master Aug 13, 2026
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@Roy-Kid
Roy-Kid deleted the release/v0.13.1 branch August 13, 2026 09:43
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