Clean GSVA public nomenclature and provenance - #72
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This was referenced Oct 1, 2026
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Summary
OMIX GSVA README and source-level help
GSVA.Rand stable outputs togsva_results.csvandgsva_heatmap.pngtemplate paths and checksums
naming and provenance
Compatibility
The scientific implementation, methods, parameters, defaults, score-table
contents, and heatmap behavior are unchanged. Output filenames changed, so the
module advances from 0.1.0/interface 1 to 0.2.0/interface 2 while still in
development. The open deployment-adapter PR must be synchronized before it is
merged or released.
This implements the first GSVA phase of #71. The compatibility-aware audit of
older modules remains tracked there.
Validation
Rscript modules/OMIX-GSVA/tests/test-module-layout.RRscript modules/OMIX-GSVA/tests/test-gsva-cli.RRscript tests/test-monorepo-layout.Rgit diff --check