GitHub - Nasrine26/vistools: Functions to help analyse Spatial transcriptomics 10x Visium data with scanpy · GitHub

Name		Name	Last commit message	Last commit date
vistools		vistools
.gitignore		.gitignore
README.md		README.md
pyproject.toml		pyproject.toml
requirements.txt		requirements.txt
setup.cfg		setup.cfg

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Functions to help analyse Spatial transcriptomics 10x Visium data

Installation

pip install git+https://github.com/Nasrine26/vistools.git

Notes

cell2loc_spatial_colours.py: contains functions I edited from cell2location code to provide custom colours to plotting up to 7 cell types at once on a slide.

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Functions to help analyse Spatial transcriptomics 10x Visium data with scanpy

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