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Here is a k-mer-based GWAS pipeline from https://github.com/voichek/kmersGWAS library.

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K-mer-based GWAS and GS in a sweet corn population

Paper

Title: Genome-wide association and genomic selection through k-mer-based variants in sweet corn.
Authors: Vianna, Mariana S.; Peixoto, Marco A.; Resende, Marcio F. R.
DOI: *


Content

01.kmers_KOC.sh: File containing....


If you have any questions about the analyses, please, contact me!

Mariana Vianna Email: mvianna@abacusbio.com


Bibliography

He C, Washburn JD, Schleif N, Hao Y, Kaeppler H, Kaeppler SM, Zhang Z, Yang J, Liu S. 2024. Trait association and prediction through integrative k‐mer analysis. The Plant Journal. 120(2):833–850. https://doi.org/10.1111/tpj.17012.

Voichek Y, Weigel D. 2020. Identifying genetic variants underlying phenotypic variation in plants without complete genomes. Nat Genet. 52(5):534–540. https://doi.org/10.1038/s41588-020-0612-7.

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Here is a k-mer-based GWAS pipeline from https://github.com/voichek/kmersGWAS library.

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