Fix/conn cli context

rapida/cli/connectivity.py

@@ -170,7 +170,7 @@ async def connectivity(ctx, bbox:tuple[float, float, float, float]=None, travel_
                        disjoint:bool=False, smooth:bool=True
     ):
     logger.info(f'Running connectivity analysis')
-    progress = ctx.obj.get('progress')
+    progress = ctx.obj.get('progress') if ctx.obj else None
     with progress:
         return await run_connectivity_analysis(
             bbox=bbox, dst_dir=dst_dir, travel_mode=travel_mode, time_intervals=time_intervals,

rapida/cli/run.py

@@ -3,7 +3,7 @@
 import click
 from rapida.cli import cli
 
-def run_cmd(rapida_command_name:str = None, command_string: str = None):
+def run_cmd_jin(rapida_command_name:str = None, command_string: str = None):
     """
     Invoke a Click entry‐point programmatically using a shell‐style string.
 
@@ -29,3 +29,42 @@ def run_cmd(rapida_command_name:str = None, command_string: str = None):
             raise click.ClickException(
                 f"Command `{command_string}` exited with status {e.code}."
             )
+
+
+def run_cmd(rapida_command_name: str = None, command_string: str = None):
+    """
+    Invoke a Click entry-point programmatically in Jupyter.
+    Handles no-arg help triggers, parameter errors, and async execution safely.
+    """
+    if not rapida_command_name:
+        raise ValueError("A command name must be provided (e.g., run_cmd('connectivity')).")
+
+    # Guard against None for command_string
+    args = shlex.split(command_string) if command_string else []
+    rapida_command_names = list(cli.list_commands(None))
+
+    if "auth" in rapida_command_names:
+        rapida_command_names.remove("auth")
+
+    assert rapida_command_name in rapida_command_names, (
+        f"Invalid command '{rapida_command_name}'. Valid options are: {', '.join(rapida_command_names)}"
+    )
+
+    full_args = [rapida_command_name] + args
+
+    try:
+        # Run through root group so context (ctx.obj['progress']) is initialized
+        return cli.main(args=full_args, standalone_mode=False)
+
+    except SystemExit as e:
+        # Exit code 0 indicates normal termination (e.g., --help or no_args_is_help)
+        if e.code != 0:
+            raise click.ClickException(
+                f"Command `{rapida_command_name} {command_string or ''}` exited with status {e.code}."
+            )
+        return None
+
+    except click.ClickException as e:
+        # Formats Click usage/validation errors (e.g., missing required options) cleanly
+        e.show()
+        return None