Weeks Lab

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1. shapemapper2 shapemapper2 Public

   Public repository for ShapeMapper 2 releases

   C++ 45 21

2. RNAvigate RNAvigate Public

   Very flexible tools for plotting and analyzing all kinds of RNA structure data

   Python 16

3. RingMapper RingMapper Public

   Code for performing RING-MaP and PAIR-MaP analysis

   Python 3 4

4. deltaSHAPE deltaSHAPE Public

   SHAPE-MaP both measures RNA flexibility at single-nucleotide resolution and quantifies the uncertainties in these measurements. The deltaSHAPE framework incorporates these uncertainties to allow de…

   Python 5 6

5. Superfold Superfold Public

   SuperFold is a pipeline that uses output data from ShapeMapper to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visual…

   Python 10 8

6. fpocketR fpocketR Public

   Program to find drug-like RNA-ligand binding pockets.

   Python 25 4