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@XiaoxuYangLab

Xiaoxu Yang Laboratory

Xiaoxu Yang Laboratory on Github

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  1. DeepMosaic DeepMosaic Public

    DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.

    Python 59 8

  2. PASM PASM Public

    Scripts for the calculation of variant allelic fractions for the validation and quantification of mosaic mutations. Scripts for PASM, TAS/TASeq, and MPAS. We provided perl+R versions, python versio…

    Python 3

  3. Human_DRG_SG Human_DRG_SG Public

    Understanding human neuronal development between dorsal root ganglia and sympathetic ganglia chains

    Jupyter Notebook 1

  4. Sperm_control_cohort_mosaicism Sperm_control_cohort_mosaicism Public

    This repository collects pipelines, codes, and some intermediate results for the study of mosaic SNV/Indels for sperm, blood, and other samples of a control cohort.

    Python 6

  5. MosaicBase MosaicBase Public

    MosaicBase is a comprehensive knowledgebase for postzygotic mosaic variants from noncancer disease-related and healthy human individuals

    3

  6. FERTBase FERTBase Public

    FERTBase is an extensitvely collected, expert reviewed fertility genetic knowledgebase

    Python

Repositories

Showing 9 of 9 repositories
  • FERTBase Public

    FERTBase is an extensitvely collected, expert reviewed fertility genetic knowledgebase

    XiaoxuYangLab/FERTBase's past year of commit activity
    Python 0 0 0 0 Updated Aug 19, 2026
  • Sperm_control_cohort_mosaicism Public

    This repository collects pipelines, codes, and some intermediate results for the study of mosaic SNV/Indels for sperm, blood, and other samples of a control cohort.

    XiaoxuYangLab/Sperm_control_cohort_mosaicism's past year of commit activity
    Python 6 GPL-3.0 0 0 0 Updated May 28, 2026
  • Human_Inhibitory_Neurons Public

    This repository contains codes and pipelines, as well as data used in the analysis of human inhibitory and excitatory neuronal clonal dynamics and lineage relationships, with cell-type-specific mosaic variant barcoding analysis (cMVBA).

    XiaoxuYangLab/Human_Inhibitory_Neurons's past year of commit activity
    Jupyter Notebook 6 GPL-3.0 0 0 0 Updated May 22, 2026
  • DeepMosaic Public

    DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.

    XiaoxuYangLab/DeepMosaic's past year of commit activity
    Python 59 8 1 0 Updated May 21, 2026
  • PASM Public

    Scripts for the calculation of variant allelic fractions for the validation and quantification of mosaic mutations. Scripts for PASM, TAS/TASeq, and MPAS. We provided perl+R versions, python versions, and an extended snakemake version with all additional annotations.

    XiaoxuYangLab/PASM's past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated May 14, 2026
  • FCD2 Public

    Codes and analyses for FCD2

    XiaoxuYangLab/FCD2's past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated May 7, 2026
  • Human_DRG_SG Public

    Understanding human neuronal development between dorsal root ganglia and sympathetic ganglia chains

    XiaoxuYangLab/Human_DRG_SG's past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Apr 4, 2026
  • .github Public
    XiaoxuYangLab/.github's past year of commit activity
    0 0 0 0 Updated Jun 13, 2025
  • MosaicBase Public

    MosaicBase is a comprehensive knowledgebase for postzygotic mosaic variants from noncancer disease-related and healthy human individuals

    XiaoxuYangLab/MosaicBase's past year of commit activity
    3 GPL-3.0 0 0 0 Updated Jun 4, 2024

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