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Fix cluster parallelism with OpenEye evaluators (v1.2.0), simplify README, clean up repo - #21

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aakankschit merged 8 commits into

mainfrom

cleanup-and-cluster-bugfix

Jul 18, 2026

Merged

Fix cluster parallelism with OpenEye evaluators (v1.2.0), simplify README, clean up repo#21
aakankschit merged 8 commits into
mainfrom
cleanup-and-cluster-bugfix

Commits on Jul 18, 2026
- chore: ignore generated artifacts and remove scratch files
  
  Aakankschit Nandkeolyar
  and
  claude
  committed
  ba5a30e
- feat(evaluator): add default_score for sparse lookup libraries
  
  Aakankschit Nandkeolyar
  and
  claude
  committed
  f208d0d
- fix(rws): prevent exp() overflow in the CATS Boltzmann softmax
  
  Aakankschit Nandkeolyar
  and
  claude
  committed
  5da11ef
- refactor(ttts): remove GMIC min-observation gate
  
  Aakankschit Nandkeolyar
  and
  claude
  committed
  b0d32e5
- feat(diagnostics): add layer-1/layer-2 search mechanism plots
  
  Aakankschit Nandkeolyar
  and
  claude
  committed
  5b9388d
- fix: make parallel evaluation work with OpenEye evaluators
  
  Aakankschit Nandkeolyar
  and
  claude
  committed
  715ea2a
- docs: add research records and reorganize manuscript notebooks
  
  Aakankschit Nandkeolyar
  and
  claude
  committed
  1064cf0
- docs: simplify README into a usable front door
  
  Aakankschit Nandkeolyar
  and
  claude
  committed
  3e1513d