compbio-utils

Miscellaneous, very simple bioinfo scripts.

Use at your own risk. Contains broken, old and orphaned stuff.

Name		Name	Last commit message	Last commit date
.gitignore		.gitignore
README.md		README.md
add_fake_rg.sh		add_fake_rg.sh
alnscore.py		alnscore.py
bam_est_err.py		bam_est_err.py
bam_readlen.sh		bam_readlen.sh
bam_sq2bed.sh		bam_sq2bed.sh
bam_to_genomefile.sh		bam_to_genomefile.sh
bam_unclip.py		bam_unclip.py
bedlen.sh		bedlen.sh
binning.sh		binning.sh
bioutils.py		bioutils.py
conv_blasr_samqv.py		conv_blasr_samqv.py
counts.py		counts.py
decode_ascii_phred.py		decode_ascii_phred.py
describe.py		describe.py
fa2vie.sh		fa2vie.sh
fasta_to_fastq.py		fasta_to_fastq.py
fastq_barcode.sh		fastq_barcode.sh
fastq_enc_from_fastqc.sh		fastq_enc_from_fastqc.sh
fastq_num_reads.py		fastq_num_reads.py
find_missing.sh		find_missing.sh
flatten_mutatrix_vcf.py		flatten_mutatrix_vcf.py
gapped_contig_joiner.py		gapped_contig_joiner.py
gb_annotation_transfer.py		gb_annotation_transfer.py
genome_split.py		genome_split.py
h5tosam.py		h5tosam.py
hrun_from_fa.py		hrun_from_fa.py
join_small_regions.py		join_small_regions.py
mempeak.sh		mempeak.sh
mutect_cat.py		mutect_cat.py
nuc_info.py		nuc_info.py
paired_nuc_freqs_from_bam.py		paired_nuc_freqs_from_bam.py
pairs_from_nsorted_bam.py		pairs_from_nsorted_bam.py
pb_indelquals_to_bam.py		pb_indelquals_to_bam.py
plot_recal.py		plot_recal.py
prune_aln_cols.py		prune_aln_cols.py
repeats_to_bed.py		repeats_to_bed.py
revcomp.py		revcomp.py
rnaplfold.py		rnaplfold.py
rnaplfold_to_wig.py		rnaplfold_to_wig.py
run_prefab.py		run_prefab.py
run_prefab.py.README		run_prefab.py.README
seqstat.py		seqstat.py
snver_vcf_pv_to_qual.py		snver_vcf_pv_to_qual.py
split_nsorted_bam.py		split_nsorted_bam.py
splitbam.py		splitbam.py
sq_from_bam.sh		sq_from_bam.sh
strelka_indel_af.py		strelka_indel_af.py
uniqc.sh		uniqc.sh
uniquify_fasta_ids.sh		uniquify_fasta_ids.sh
varscan_vcf_pv_to_qual.py		varscan_vcf_pv_to_qual.py
vcf_get_val.py		vcf_get_val.py
vcf_matches_ref.py		vcf_matches_ref.py
vcf_read_support.py		vcf_read_support.py
vcf_shared_multi.py		vcf_shared_multi.py
vcf_var_rel_pos.py		vcf_var_rel_pos.py
vcf_venn.py		vcf_venn.py

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