Repository navigation
Add hpaSearch() vignette and update documentation - #38
Merged
Merged
Conversation
Adds an 8th tutorial vignette walking through hpaSearch() (simple lookups, exact matching, column selection, advanced field queries, and feeding results into hpaVis/hpaXml), and adds short hpaSearch() and hpaXmlParse() sections to the quick-start and in-depth vignettes so both new functions are discoverable from the main docs. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01GxvQc6HtxL9eTGTdMkAru1
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
This PR adds comprehensive documentation for the
hpaSearch()function, including a new dedicated vignette and updates to existing quick-start and in-depth vignettes to cover the search functionality.Key Changes
New vignette: Added
h_HPAanalyze_case_search.Rmd- a detailed tutorial demonstrating how to usehpaSearch()to query the Human Protein Atlas API directly from R, including:hpaVis,hpaXmlGet, etc.)Updated quick-start vignette (
a_HPAanalyze_quick_start.Rmd):hpaSearch()hpaXmlParse()for completenessUpdated in-depth vignette (
b_HPAanalyze_indepth.Rmd):hparpackage to include search functionalityUpdated NEWS: Added entries documenting the new vignette and coverage of
hpaSearch()andhpaXmlParse()in existing vignettesNotable Details
hpaSearch()eliminates the need for manual browser-based searches and tsv file downloadshttps://claude.ai/code/session_01GxvQc6HtxL9eTGTdMkAru1