Upgrade to mizer 3.4

[gustavdelius]

Summary of Changes

This PR upgrades mizerEvolution to be fully compatible with mizer 3.4:

1. Package Configuration & Documentation

• DESCRIPTION: Updated dependency to mizer (>= 3.4.0), added lifecycle to Imports:, removed methods, configured testthat (>= 3.0.0, edition 3), and added package URL and BugReports.
• NEWS.md: Added release notes for version 0.1.0.
• R/mizerEvolution-package.R: Migrated to _PACKAGE roxygen documentation, cleaned up imports, and registered global variables.
• _pkgdown.yml: Added pkgdown website configuration organized by topic and generated the complete website under docs/.

2. Core Evolution Mechanics & Constructors

• evoParams():
  • Renamed deprecated arguments min_w_inf / max_w_inf to min_w_max / max_w_max, and R_factor to reproduction_level (with lifecycle::deprecate_warn for backward compatibility).
  • Registered extension metadata via recordExtension().
  • Modernized parameter accessors to use S3 generics (species_params(), gear_params(), resource_params()).
  • Wrapped model construction in with_info_level().
• evoProject() & finalTouch():
  • Fixed undefined variable references (mAmplitude, eta, z0pre, h, f0, resident_params).
  • Handled array dimensions safely to prevent dimension dropping when subsetting.
  • Fully supported mutation and alien invasion schedules using either numeric rates or dataframe events.
• extinctionRDD():
  • Cleaned thresholding and recruitment calculation logic.

3. Plotting Functions

• Updated all plotting functions to check for S3 MizerSim using inherits().
• Replaced deprecated mizer functions with modern counterparts (getERepro(), getMort()).
• Fixed matrix/dataframe subsetting and dimnames across all plotting functions (plotDynamics, plotSS, plotevoFeeding, plotevoGrowth, plotStarvation, plotevoMortality, plotSpawn, plotPredRate, plotPredMort, plotevoTrait).

4. Tests & Quality Assurance

• Upgraded test assertions to testthat 3.x (expect_s3_class()).
• Added comprehensive unit tests for evoParams(), extinctionRDD(), alien_synthesis(), nameGenerator(), tempFun(), evoProject(), and all plotting functions (42 passing tests).
• Verified with devtools::check(): 0 errors, 0 warnings, 0 notes.