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BEDApub

Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, 4070 Basel

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besca besca Public

BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

Python 51 17
splicekit splicekit Public

splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

Python 24 4
designit designit Public

Blocking and randomization for experimental design

HTML 9 1
Roche-Computational-Sciences-Summer-School Roche-Computational-Sciences-Summer-School Public

Forked from LuisaMohr/PMDA-Summer-School

Public website of Roche PMDA Summer School

7 2
space-microbe space-microbe Public

Python 5
besca_publication_results besca_publication_results Public

Jupyter Notebook 4 1

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Showing 10 of 60 repositories

2026-10-Zukunftstag-Projekt Public Forked from bedapub/2025-10-Zukunftstag-simulation
Für Roche's Zukunftstag 2026 - Zusammenarbeit von Shania Street, Yannis Stebler und Jitao David Zhang

bedapub/2026-10-Zukunftstag-Projekt's past year of commit activity

Jupyter Notebook 0 2 0 0 Updated Oct 30, 2026
Pipeline_for_TES_AAV_LongReads Public Forked from Novartis/Pipeline_for_TES_AAV_LongReads
This pipeline is designed for AAV integration site analysis using Target Enrichment Sequencing (TES) coupled with PacBio long-read sequencing. It enables the detection of integration site breakpoints and provides information on the structure of the integrated AAV vector genome to support the safety assessment of AAV-based gene therapies.

bedapub/Pipeline_for_TES_AAV_LongReads's past year of commit activity

Jupyter Notebook 1 MIT 1 0 0 Updated Oct 30, 2026
besca Public
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

bedapub/besca's past year of commit activity

Python 51 GPL-3.0 17 32 (1 issue needs help) 4 Updated Oct 27, 2026
bksnake Public
Public version of bksnake - biokit snakemake - bulk RNASeq Snakemake workflow

bedapub/bksnake's past year of commit activity

Python 2 0 0 0 Updated Oct 21, 2026
splicekit Public
splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

bedapub/splicekit's past year of commit activity

Python 24 GPL-3.0 4 5 0 Updated Oct 17, 2026
designit Public
Blocking and randomization for experimental design

bedapub/designit's past year of commit activity

HTML 9 1 15 (4 issues need help) 6 Updated Sep 3, 2026
QM-LUX Public
QM-LUX (Quantum Molecular Learning with predicted UV-Vis for Xenotoxicity)

bedapub/QM-LUX's past year of commit activity

Python 1 Apache-2.0 0 0 1 Updated Sep 2, 2026
ribiosAnnotation Public
Annotate features (genes, mRNAs, proteins, ...) with ribios

bedapub/ribiosAnnotation's past year of commit activity

R 0 1 2 0 Updated Aug 25, 2026
ribiosUtils Public
The ribiosUtils package, a swiss-army knife for bioinformatics and computational biology tasks in drug discovery

bedapub/ribiosUtils's past year of commit activity

C 1 1 0 0 Updated Jun 15, 2026
ribiosExpression Public
Data structure and functions for gene expression analysis

bedapub/ribiosExpression's past year of commit activity

R 0 1 1 0 Updated Jun 15, 2026

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