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belowlab

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  1. ldsc ldsc Public

    Forked from bulik/ldsc

    LD Score Regression (LDSC)

    HTML 16 9

  2. IMMerge IMMerge Public

    Tool to merge VCF genotype files at scale

    Python 12 7

  3. COMPADRE COMPADRE Public

    Pedigree generation software incorporating PRIMUS, ERSA, and PADRE.

    Perl 3 1

  4. r-peer r-peer Public

    A readonly copy of peer packaged as an github_install capable R package

    C++ 2

  5. shapeit4 shapeit4 Public

    Forked from odelaneau/shapeit4

    Segmented HAPlotype Estimation and Imputation Tool

    C++ 1 1

  6. Concordance-Analysis Concordance-Analysis Public

    This analysis was performed to determine if there was concordance between our ancestries-specific GWAS summary statistics. Please see Shaw et al. 2021

    Python 1

Repositories

Showing 10 of 63 repositories
  • PheMINE Public

    PheMINE is a reproducible, automated workflow for analyzing electronic health records. It streamlines cohort construction, performs permutation-based phecode enrichment analysis, and trains supervised learning models (Random Forest, XGBoost, Neural Networks) for disease prediction.

    belowlab/PheMINE's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 4, 2026
  • drive Public Forked from jtb324/IBDCluster

    A cli tool to analyze ibd sharing for a specific locus for multiple phenotypes

    belowlab/drive's past year of commit activity
    Python 0 Apache-2.0 4 0 0 Updated Aug 11, 2026
  • COMPADRE Public

    Pedigree generation software incorporating PRIMUS, ERSA, and PADRE.

    belowlab/COMPADRE's past year of commit activity
    Perl 3 1 0 1 Updated Jul 9, 2026
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    belowlab/staged-recipes's past year of commit activity
    Python 0 BSD-3-Clause 6,364 0 0 Updated Jul 7, 2026
  • shapeit Public Forked from odelaneau/shapeit

    Segmented HAPlotype Estimation and Imputation Tool

    belowlab/shapeit's past year of commit activity
    C++ 0 MIT 6 0 0 Updated May 19, 2026
  • CCHC_transcriptomics Public
    belowlab/CCHC_transcriptomics's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 11, 2026
  • SURVIVOR Public Forked from fritzsedlazeck/SURVIVOR

    Toolset for SV simulation, comparison and filtering

    belowlab/SURVIVOR's past year of commit activity
    C++ 0 MIT 51 0 0 Updated Mar 18, 2026
  • CCHC_proteomics_QC Public

    QC of CCHC proteomics batch2

    belowlab/CCHC_proteomics_QC's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 13, 2026
  • pedigree-simulator Public

    Pedigree simulation software tool

    belowlab/pedigree-simulator's past year of commit activity
    Python 0 0 0 0 Updated Nov 22, 2025
  • hap-ibd Public Forked from browning-lab/hap-ibd

    The hap-ibd program detects identity-by-descent segments in phased genotype data.

    belowlab/hap-ibd's past year of commit activity
    Java 0 11 0 1 Updated Nov 21, 2025
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