Issues

• MOFA + Mefisto stuck on Optimising sigma node

  bioFAM/MOFA2#202 · Filter by author komalsrathi opened on May 22, 2026
  4

• checkForRemoteErrors

  bioFAM/MOFA2#184 · Filter by author wangcongjian opened on Sep 19, 2025

• Clustering features

  bioFAM/MOFA2#183 · Filter by author drosop opened on Jun 26, 2025

• run_enrichment issue

  bioFAM/MOFA2#181 · Filter by author 5959595995 opened on May 17, 2025

• 'ascii' codec can't decode byte 0xce in position 2: ordinal not in range(128)

  bioFAM/MOFA2#177 · Filter by author SimonE1220 opened on Mar 13, 2025

• R crashes when running run_mofa

  bioFAM/MOFA2#173 · Filter by author elffairy90 opened on Jan 9, 2025
  5

• Uncertainty Estimates of trained MOFA model

  bioFAM/MOFA2#169 · Filter by author phlicht opened on Oct 19, 2024
  1

• incorrect plot margins in correlate_factors_with_covariates

  bioFAM/MOFA2#168 · Filter by author cleiti opened on Sep 19, 2024

• Questions about using MOFA with bulk RNA-seq deconvolution results and uneven view sizes

  bioFAM/MOFA2#167 · Filter by author doctorfaraday520 opened on Sep 15, 2024

• Empty factors - Spatial Transcripomics data

  bioFAM/MOFA2#165 · Filter by author rockdeme opened on Jul 13, 2024

• run_enrichment does not work when selecting a single factor

  bioFAM/MOFA2#164 · Filter by author jjcaff opened on Jun 16, 2024
  1

• not using the GPU well

  bioFAM/MOFA2#163 · Filter by author dorothyzh opened on Jun 14, 2024

• Error: run_enrichment error feature.sets has to be a list or a binary matrix.**

  bioFAM/MOFA2#160 · Filter by author mluciarr opened on Apr 23, 2024

• Error: Error in h5checktype(). H5Identifier not valid.

  bioFAM/MOFA2#159 · Filter by author mluciarr opened on Apr 18, 2024

• plot_enrichment_detailed function is not creating labeled plots

  bioFAM/MOFA2#158 · Filter by author nalipan1 opened on Mar 27, 2024
  3

• AttributeError: Module 'scipy' has no attribute 'shape'

  bioFAM/MOFA2#156 · Filter by author nbutyrate opened on Mar 26, 2024
  9

• Error in create_mofa_from_Seurat(BJ, groups = NULL, assays = c("RNA", :

  bioFAM/MOFA2#155 · Filter by author nbutyrate opened on Mar 26, 2024

• correlate_covariates: redundant conversion to numeric and incorrect warning

  bioFAM/MOFA2#152 · Filter by author artur-sannikov opened on Mar 20, 2024
  2

• get_factors and get_variance_explained

  bioFAM/MOFA2#151 · Filter by author artur-sannikov opened on Mar 20, 2024

• Error in training options

  bioFAM/MOFA2#149 · Filter by author vamikakarn opened on Mar 6, 2024

• Mefisto error - ValueError: operands could not be broadcast together with shapes (10,1) (23,1)

  bioFAM/MOFA2#147 · Filter by author saum-kmr opened on Feb 21, 2024
  6

• AttributeError: 'BayesNet' object has no attribute 'train_stats'

  bioFAM/MOFA2#146 · Filter by author Marwansha opened on Feb 14, 2024
  2

• Get noise terms with MOFA2 R package

  bioFAM/MOFA2#145 · Filter by author BangzhuoTongUU opened on Jan 22, 2024

• geneID in place of Features

  bioFAM/MOFA2#143 · Filter by author AudreyDub opened on Jan 10, 2024

• installation of package ‘basilisk’ had non-zero exit status

  bioFAM/MOFA2#142 · Filter by author AlbertSL98 opened on Dec 7, 2023
  1