Issues

• Different length reads for R1 and R2

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#24 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• bowtie-build failed to create alignment index

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#25 · Filter by author GoogleCodeExporter opened on Jun 19, 2015
  2

• Crashed with error "'bowtie-build' failed to create breakpoint index"

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#22 · Filter by author GoogleCodeExporter opened on Jun 19, 2015
  3

• easy to fix linker error on some systems including macosx

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#23 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• Detail about output file

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#20 · Filter by author GoogleCodeExporter opened on Jun 19, 2015
  1

• IOError: [Errno 24] Too many open files:

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#21 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• CHIMERASCAN 0.4.5 runs for hours then gets killed by my system

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#19 · Filter by author GoogleCodeExporter opened on Jun 19, 2015
  6

• crash after "Extracting single-mapped reads that may span breakpoints"

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#17 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• Sudden crash during runtime

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#18 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• csamtools error

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#15 · Filter by author GoogleCodeExporter opened on Jun 19, 2015
  1

• Detailed explanation of chimerascan output

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#16 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• new feature? possibility of running the filter chimeras as a stand alone step?

  auto-migratedPriority-MediumType-Defect
  biobuilds/chimerascan#14 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• Add sequences for Poly-A+ tails

  auto-migratedPriority-MediumType-Enhancement
  biobuilds/chimerascan#9 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• Dynamic read trimming of poor quality reads

  auto-migratedPriority-MediumType-Enhancement
  biobuilds/chimerascan#6 · Filter by author GoogleCodeExporter opened on Jun 19, 2015

• Support for variable read lengths

  auto-migratedPriority-MediumType-Task
  biobuilds/chimerascan#1 · Filter by author GoogleCodeExporter opened on Jun 19, 2015