Issues

• Consider switching graph assembly to the >= 10%-of-peak presence definition

  cole-trapnell-lab/platt#63 · Filter by author ctrapnell opened on Oct 7, 2026

• Use "magnitude" rather than "severity" for abundance effect-size tiers

  cole-trapnell-lab/platt#58 · Filter by author maddyduran opened on Sep 18, 2026

• Small Issue - Hard Coded timepoint metadata in get_perturbation_effects()

  cole-trapnell-lab/platt#18 · Filter by author acmullen-med opened on Aug 7, 2025

• grouped platt graph with different node labels

  cole-trapnell-lab/platt#16 · Filter by author waltno opened on Aug 6, 2025
  1

• Allow user to specify placement of nodes

  enhancement
  Feature

  cole-trapnell-lab/platt#9 · Filter by author rfriedman22 opened on Jun 3, 2025
  1

• allow shrinkage to be applied when parents have very low expression (high SE)

  cole-trapnell-lab/platt#8 · Filter by author eliza-barkan opened on May 28, 2025
  1

• Checking if full model is full rank

  cole-trapnell-lab/platt#5 · Filter by author rfriedman22 opened on Dec 5, 2024