Release 0.12.0 - #169
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Move logging setup out of __init__.py
Remove duplicate sequence_fit < 0.60 check
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Changes:
upload_pephubhave been removed from function signatures, docstrings, and internal logic across the codebase, including inbedboss.py,bedbuncher.py,bbuploader/main.py,bedboss_hpc.py, and the CLI (cli.py). This means users can no longer upload to PEPHub using any part of the pipeline.bedboss/bbuploader/__init__.pyand addedlogmuseimport tocli.pyfor consistent logging across the CLI._read_bed_fileinbedclassifier.pyto only drop columns that are entirely NA, instead of any column with any NA.snapshot_appincli.pyfrombedboss.scripts.snapshot.TODO:
__version__.pyfile