David H. O'Connor Lab at University of Wisconsin—Madison
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dairy-hpai-monitoring
dairy-hpai-monitoring PublicReal-Time Monitoring of HPAI Detections in One or More Dairy Products in the United States
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air-metagenomics
air-metagenomics Public archiveAnalysis Pipeline for Minor and Ramuta et al. 2023: Metagenomic sequencing detects human respiratory and enteric viruses in air samples collected from congregate settings
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mhc_genotyper
mhc_genotyper PublicMHC Class I and II genotyper for Non-Human primates with high-accuracy short reads
Jupyter Notebook 1
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htcondor_basecalling
htcondor_basecalling PublicShell scripts, submit files, and dag files for basecalling Oxford Nanopore signal files on CHTC's HTCondor cluster
Shell 1
Repositories
- cyclospora-in-wastewater-metagenomics Public
Evidence for cyclospora rRNA in metagenomic wastewater datasets
- nhp-immunogenomics Public
NHP immunogenomics resources maintained by the O'Connor lab as part of a NIAID-funded MHC contract and in support of the Wisconsin National Primate Research Center's Genomics Services Unit.
- dairy-hpai-monitoring Public
Real-Time Monitoring of HPAI Detections in One or More Dairy Products in the United States
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- team-canada-world-cup-2026 Public
Interactive manuscript + submission PDF for the Team Canada air-sampling study (2026 FIFA World Cup).
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- nao-mgs-workflow-chtc Public Forked from securebio/nao-mgs-workflow
CHTC fork of NAO MGS workflow used by SecureBio
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