Dräger Lab
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Repositories
- refinegems Public
refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).
- SPECIMEN Public
Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.
- SBSCL Public
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
- MassChargeCuration Public
Python module to automatically curate the mass and charge assignments for metabolites in a metabolic model.
- OptSolvX Public
Provides a unified and flexible Java interface for mathematical optimization using multiple solver backends.
- EscherConverter Public
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
- bioconda-recipes Public Forked from bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
- GEM_Tutorial Public
This repository contains the data, Jupyter Notebooks and setup for a workshop on the toolbox ``refineGEMs`` and the workflow collection ``SPECIMEN``.
- SBOannotator Public
SBOannotator: A Python tool for the automated assignment of Systems Biology Onotology terms
- .github Public
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