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Welcome to the triUMPF wiki!

Documentation

You will find all of our documentation for the current release below and in the sidebar to the right.

• Introduction

  • About- What is triUMPF?
  • Citation- How should I cite triUMPF?
  • Contact- Who should I contact in case of issues?

• Installation

  • Installing triUMPF- How do I install triUMPF?
  • Installing dependencies- What sort of computer and packages are required to run triUMPF?

• Required files

  • Downloading files- What files do I need for a successful run?

• Quick start

  • Tutorial to predicting pathways- How can I use triUMPF for predicting pathways?
  • Example usage- How do I run triUMPF?

• Evaluation

  • Performance evaluation on Golden data- How do I check my model's performance?
  • Performance evaluation on CAMI data- How do I check my model's performance?

• Advanced usage

  • Preprocessing- How can I generate specific files of my choice?
  • Training triUMPF- How can I train triUMPF to my specifications?

• Glossary- Definitions of a list of concepts.

Don't see what you're looking for? Create an issue using the GitHub issue tracker.