Issues

• Protein sequence output containing stop codons "*"

  hyattpd/Prodigal#121 · Filter by author Ieremie opened on Jan 28, 2026

• Inquiry on gene intergrity

  hyattpd/Prodigal#120 · Filter by author LanSabb opened on Oct 13, 2025

• Benchmark Genome Sequences Used in Prodigal Evaluation

  hyattpd/Prodigal#117 · Filter by author Genereux-akotenou opened on May 3, 2025

• Specifying translation table with -g not working as expected when using -p meta

  hyattpd/Prodigal#116 · Filter by author m-taubert opened on Feb 26, 2025
  1

• corresponding ORF not called in different isolates despite identical sequence

  hyattpd/Prodigal#115 · Filter by author 0xaf1f opened on Dec 28, 2024
  6

• Broken website link

  hyattpd/Prodigal#112 · Filter by author tvtv195 opened on Apr 20, 2024
  1

• Can I use Prodigal to predict fungal genes?

  hyattpd/Prodigal#111 · Filter by author mojiefei opened on Apr 8, 2024
  1

• prodigal on metatranscriptome assembly

  hyattpd/Prodigal#110 · Filter by author ckeuschn opened on Mar 18, 2024

• Question about gene coordinates

  hyattpd/Prodigal#109 · Filter by author pipparichter opened on Jan 26, 2024

• Prodigal on short metagenomic reads

  hyattpd/Prodigal#107 · Filter by author EorgeKit opened on Nov 27, 2023

• how to edit the source code to change the length of genes

  hyattpd/Prodigal#106 · Filter by author KeyLllll opened on Nov 23, 2023
  1

• strand orientation

  hyattpd/Prodigal#105 · Filter by author mmpust opened on Oct 12, 2023

• Installation issue

  hyattpd/Prodigal#104 · Filter by author Rr9825 opened on Jul 16, 2023
  1

• only a star in a sequence

  hyattpd/Prodigal#103 · Filter by author jianshu93 opened on Jul 1, 2023

• Issue with output file content

  hyattpd/Prodigal#99 · Filter by author soluna1 opened on Dec 22, 2022
  1

• Please make a release

  hyattpd/Prodigal#97 · Filter by author yurivict opened on Nov 26, 2022
  2

• What Details of '-g' parameters are?

  hyattpd/Prodigal#93 · Filter by author timeresistance1996 opened on Aug 11, 2022
  1

• gcc: error: language CORE-AVX2 not recognized

  hyattpd/Prodigal#92 · Filter by author morgansobol opened on Aug 8, 2022
  1

• Prodigal v2.6.3 no stop_type output

  hyattpd/Prodigal#91 · Filter by author Jemimacat opened on Jun 21, 2022
  1

• Differences in gene prediction for forward and reverse sequences

  hyattpd/Prodigal#90 · Filter by author caballero opened on Jun 13, 2022

• Gene calling on very short viral sequences

  hyattpd/Prodigal#89 · Filter by author karchern opened on Oct 1, 2021

• Predicted CDSs of plasmid AF149757.1 have interior stop codons

  hyattpd/Prodigal#86 · Filter by author vbrover opened on Jun 6, 2021

• -w command for summary statistic returns error

  hyattpd/Prodigal#85 · Filter by author MajaCN opened on Feb 12, 2021
  3

• Virus prediction

  hyattpd/Prodigal#84 · Filter by author maocheng2020 opened on Feb 1, 2021

• fasta files - empty lines handling

  hyattpd/Prodigal#83 · Filter by author GaioTransposon opened on Dec 18, 2020