hcv_seqs_analysis

Analysis of publicly available HCV sequences from LANL's HCV database

Name		Name	Last commit message	Last commit date
plots		plots
LICENSE		LICENSE
README.md		README.md
check_cpg_within_zap_motifs.csv		check_cpg_within_zap_motifs.csv
counter_file_cpg.csv		counter_file_cpg.csv
counter_file_zap_4_motif.csv		counter_file_zap_4_motif.csv
counter_file_zap_5_motif.csv		counter_file_zap_5_motif.csv
counter_file_zap_6_motif.csv		counter_file_zap_6_motif.csv
counter_file_zap_7_motif.csv		counter_file_zap_7_motif.csv
counter_file_zap_8_motif.csv		counter_file_zap_8_motif.csv
df01_3983_seqs.csv		df01_3983_seqs.csv
df02_2616_seqs.csv		df02_2616_seqs.csv
df_sanket.csv		df_sanket.csv
df_with_subtype_info.csv		df_with_subtype_info.csv
fasta_ref_and_2616_output.fasta		fasta_ref_and_2616_output.fasta
gb_3983_output.gb		gb_3983_output.gb
hcv_seqs_analysis_pathogens.ipynb		hcv_seqs_analysis_pathogens.ipynb
mapping.xlsx		mapping.xlsx
msa_properly_formatted.fasta		msa_properly_formatted.fasta
output_msa.fasta		output_msa.fasta
prepost_hcv_ref_seq.fasta		prepost_hcv_ref_seq.fasta
subtype1a.csv		subtype1a.csv
subtype1b.csv		subtype1b.csv
zap_binding_motif_data_for_fig4a.csv		zap_binding_motif_data_for_fig4a.csv

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