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Update `main` branch CI: container image, `renv.locks` and deployment - #298

Merged

averissimo merged 30 commits into

mainfrom

update_main

Oct 19, 2026

Merged

Update `main` branch CI: container image, `renv.locks` and deployment#298
averissimo merged 30 commits into
mainfrom
update_main

Commits on Aug 21, 2026
- feat: update apps and deployment
  averissimo
  committed
  276b456
- chore: missing save
  averissimo
  committed
  8a3888a
- fix: update npm packages
  averissimo
  committed
  6756f6f
- fix: use stable version if target is main branch
  averissimo
  committed
  692fce7
- revert: biocbase to released
  averissimo
  committed
  7baf0fe
Commits on Sep 2, 2026
- update renv
  wangben718
  committed
  f89ee4f
Commits on Oct 12, 2026
- fix: install packages from CRAN
  averissimo
  committed
  8c7c316
- feat: explicitly give repos
  averissimo
  committed
  aa562b6
- feat: update to npm packages
  averissimo
  committed
  5f47f45
- feat: updates to versions on npm
  averissimo
  committed
  a84165a
- feat: update with teal.picks
  averissimo
  committed
  52ffdf9
Commits on Oct 13, 2026
- feat: update renv.lock with new workflow
  averissimo
  committed
  230420b
Commits on Oct 14, 2026
- feat: import longitudinal
  averissimo
  committed
  5c8a33f
- fix: extend timeout in safety app
  averissimo
  committed
  339b252
- feat: update sourceme
  averissimo
  committed
  6a92aca
- feat: requires package installation
  averissimo
  committed
  5ee8bd3
- Fix typo in lockfile_read function usage
  
  averissimo
  and
  Copilot
  authored
  d5f684c
- Update _internal/utils/sourceme.R
  averissimo
  authored
  16f1ef5
- fix: smq
  averissimo
  committed
  39c2ba9
- docs: update on script
  averissimo
  committed
  4dac097
- docs: small update
  averissimo
  committed
  567ff65
- sync: with update_dev_2
  averissimo
  committed
  de0cd5f
- fix: increase timeout in safety
  averissimo
  committed
  fceae64
- fix: increase timeout in all tests
  averissimo
  committed
  829ad0c
Commits on Oct 15, 2026
- chore: update url
  averissimo
  committed
  b952f0d
- fix: prevent conflicts by running app in a separate r process
  averissimo
  committed
  be65555
Commits on Oct 16, 2026
- feat: use own process to restore and run shiny app
  averissimo
  committed
  2926ac2
Commits on Oct 19, 2026
- docs: update docs to remove unused argument
  averissimo
  committed
  a1ecd2c
- fix: add fallback to failure to find .Rprofile
  averissimo
  committed
  c226100
- docs: add comment
  averissimo
  committed
  d8b122d

Commits

Commits on Aug 21, 2026

Commits on Sep 2, 2026

Commits on Oct 12, 2026

Commits on Oct 13, 2026

Commits on Oct 14, 2026

Commits on Oct 15, 2026

Commits on Oct 16, 2026

Commits on Oct 19, 2026