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Welcome to the SqueezeMeta wiki!

We aren't really that good at making wikis (yet). This said, we have compiled a series of tutorials on several aspects of SqueezeMeta.

SqueezeMeta internals

• A discussion on taxonomic annotation and the meaning of disparity values

Use cases

• When to use each of the SqueezeMeta modes
• Combining metagenomes and metatranscriptomes with SqueezeMeta
• Looking (exhaustively) for a particular function
• Some papers using SqueezeMeta (non-comprehensive list)

Downstream analysis of SqueezeMeta results

• Loading SqueezeMeta results into Anvi'o
• Using R to analyze your SqueezeMeta results
• Using SQMtools (pre-1.6.2) in a Windows environment (Courtsey of @gruningerrj)