Issues

• Only configure JSON logging if dlt.config is present and JSON is the configured value

  kbase/cdm-data-loaders#299 · Filter by author ialarmedalien opened on Oct 23, 2026

• Docker tests

  kbase/cdm-data-loaders#297 · Filter by author ialarmedalien opened on Oct 22, 2026

• Fix cdata parsing bug in xmltodict

  kbase/cdm-data-loaders#290 · Filter by author ialarmedalien opened on Oct 20, 2026

• Add pre-pipeline data cleaning: XSV, JSON, XML

  kbase/cdm-data-loaders#289 · Filter by author ialarmedalien opened on Oct 20, 2026

• Pydantic settings shortcut / alias collisions check

  kbase/cdm-data-loaders#288 · Filter by author ialarmedalien opened on Oct 20, 2026

• Github code quality bot issues

  kbase/cdm-data-loaders#257 · Filter by author ialarmedalien opened on Sep 26, 2026

• Assess NCBI FTP pipeline for changes necessary to support raw data storage

  kbase/cdm-data-loaders#219 · Filter by author ialarmedalien opened on Aug 10, 2026
  1

  

• Reference data storage and processed data retrieval

  kbase/cdm-data-loaders#218 · Filter by author ialarmedalien opened on Aug 10, 2026

• Generic xSV validation script

  kbase/cdm-data-loaders#182 · Filter by author ialarmedalien opened on Jun 10, 2026

• assess ncbi_ftp_manifest.ipynb and convert to script

  kbase/cdm-data-loaders#181 · Filter by author ialarmedalien opened on Jun 9, 2026

• Convert notebooks/ncbi_ftp_promote.ipynb into script

  kbase/cdm-data-loaders#180 · Filter by author ialarmedalien opened on Jun 9, 2026
  

• Convert NCBI FTP workflow notebooks to python scripts

  kbase/cdm-data-loaders#179 · Filter by author ialarmedalien opened on Jun 9, 2026
  

• File index tables

  kbase/cdm-data-loaders#167 · Filter by author ialarmedalien opened on Jun 2, 2026

• xSV validation / linting

  kbase/cdm-data-loaders#166 · Filter by author ialarmedalien opened on Jun 2, 2026
  2

• NCBI updates - ID lists

  kbase/cdm-data-loaders#165 · Filter by author ialarmedalien opened on Jun 2, 2026