Lint and test workflow

Workflow runs for Lint and test workflow

• Merge pull request #217 from khanlab/snakemake-upgrade

  completed successfully:
  Lint and test workflow#782:Commit788415fpushedbyakhanf
  main

  Oct 30, 20262m 1s
  More actions for workflow run 782

• minor resource update

  completed successfully:
  Lint and test workflow#781:Commit0644173pushedbyakhanf
  snakemake-upgrade

  Oct 29, 20261m 50s
  More actions for workflow run 781

• Merge pull request #216 from khanlab/n4-biasfield-streaming

  completed successfully:
  Lint and test workflow#780:Commit5b50ef4pushedbyakhanf
  v0.10.0

  Oct 28, 20261m 39s
  More actions for workflow run 780

• Merge pull request #216 from khanlab/n4-biasfield-streaming

  completed successfully:
  Lint and test workflow#779:Commit5b50ef4pushedbyakhanf
  main

  Oct 27, 20262m 4s
  More actions for workflow run 779

• Require zarrnii 0.22, which streams n4_biasfield and keeps OME-Zarr g…

  completed successfully:
  Lint and test workflow#778:Commitc57da94pushedbyakhanf
  n4-biasfield-streaming

  Oct 27, 20261m 59s
  More actions for workflow run 778

• Stream n4_biasfield instead of scaling memory with the image

  completed successfully:
  Lint and test workflow#777:Commitdf80400pushedbyakhanf
  n4-biasfield-streaming

  Oct 26, 20261m 43s
  More actions for workflow run 777

• Merge pull request #214 from khanlab/group-small-jobs

  completed successfully:
  Lint and test workflow#776:Commit08248aapushedbyakhanf
  main

  Oct 26, 20261m 25s
  More actions for workflow run 776

• Give vesselFM and LANTERN more memory

  completed successfully:
  Lint and test workflow#775:Commitef240ddpushedbyakhanf
  group-small-jobs

  Oct 26, 20261m 40s
  More actions for workflow run 775

• Name cluster job scripts by job id, and give regionprops more memory

  completed successfully:
  Lint and test workflow#774:Commit5234096pushedbyakhanf
  group-small-jobs

  Oct 25, 20261m 37s
  More actions for workflow run 774

• Group the short jobs of each subject into one cluster job per stage

  completed successfully:
  Lint and test workflow#773:Commit476d5d4pushedbyakhanf
  group-small-jobs

  Oct 25, 20261m 27s
  More actions for workflow run 773

• Merge pull request #213 from khanlab/benchmark-resources

  completed successfully:
  Lint and test workflow#772:Commitadd5176pushedbyakhanf
  main

  Oct 25, 20261m 15s
  More actions for workflow run 772

• Document --retries and --benchmark for cluster runs

  completed successfully:
  Lint and test workflow#771:Commitbee9101pushedbyakhanf
  benchmark-resources

  Oct 25, 20261m 26s
  More actions for workflow run 771

• Refit resources with a second benchmark run at registration level 4

  completed successfully:
  Lint and test workflow#770:Commit3230dc5pushedbyakhanf
  benchmark-resources

  Oct 25, 20261m 45s
  More actions for workflow run 770

• Set rule resources from --benchmark measurements on full-resolution data

  completed successfully:
  Lint and test workflow#769:Commita514edfpushedbyakhanf
  benchmark-resources

  Oct 25, 20261m 11s
  More actions for workflow run 769

• Read SPIM sizes for --benchmark in a job, not on the login node

  completed successfully:
  Lint and test workflow#768:Commitf53babfpushedbyakhanf
  benchmark-resources

  Oct 24, 20261m 38s
  More actions for workflow run 768

• Document running the gpu environment from a SLURM login node

  completed successfully:
  Lint and test workflow#767:Commit9612d9epushedbyakhanf
  benchmark-resources

  Oct 24, 20261m 15s
  More actions for workflow run 767

• Relate benchmarks to the registration and segmentation level of each run

  completed successfully:
  Lint and test workflow#766:Commit8c00815pushedbyakhanf
  benchmark-resources

  Oct 24, 20261m 40s
  More actions for workflow run 766

• Add --benchmark to record per-job resource usage for tuning rule reso…

  completed successfully:
  Lint and test workflow#765:Commit41e6e5bpushedbyakhanf
  benchmark-resources

  Oct 24, 20261m 30s
  More actions for workflow run 765

• Merge pull request #212 from khanlab/cohort-template

  completed successfully:
  Lint and test workflow#764:Commitfa0a99cpushedbyakhanf
  main

  Oct 24, 20261m 42s
  More actions for workflow run 764

• Export the cohort template as a ready-to-use --configfile

  completed successfully:
  Lint and test workflow#763:Commit742ff5epushedbyakhanf
  cohort-template

  Oct 24, 20261m 24s
  More actions for workflow run 763

• Record the cohort template input resampling in template_description.json

  completed successfully:
  Lint and test workflow#762:Commit6e29ed3pushedbyakhanf
  cohort-template

  Oct 24, 20261m 58s
  More actions for workflow run 762

• Cohort template: disable shape averaging, add resample option, fused ops

  completed successfully:
  Lint and test workflow#761:Commit6ff3bafpushedbyakhanf
  cohort-template

  Oct 24, 20262m 5s
  More actions for workflow run 761

• move fireants to pixi dep

  completed successfully:
  Lint and test workflow#760:Commita2f7a87pushedbyakhanf
  cohort-template

  Oct 24, 20261m 54s
  More actions for workflow run 760

• Pin FireANTs to khanlab multichannel-save commit

  completed successfully:
  Lint and test workflow#759:Commita99da25pushedbyakhanf
  cohort-template

  Oct 23, 20261m 43s
  More actions for workflow run 759

• Merge pull request #203 from khanlab/reuse-derivatives

  completed successfully:
  Lint and test workflow#758:Commit342eeacpushedbyakhanf
  main

  Oct 23, 20261m 44s
  More actions for workflow run 758