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Snakemake upgrade for bug fix - #217

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akhanf merged 2 commits into
mainfrom
snakemake-upgrade
Oct 30, 2026
Merged

akhanf merged 2 commits into
mainfrom
snakemake-upgrade

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@akhanf

@akhanf akhanf commented Oct 30, 2026

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This pull request makes a small update to the resource allocation for the deform_spim_nii_to_template_nii rule. The change increases the minimum and maximum memory allocated to this workflow step, likely to accommodate larger datasets or improve performance.

  • Increased the mem_mb resource allocation in the deform_spim_nii_to_template_nii rule from a range of 4000–21000 MB to 8000–32000 MB in spimquant/workflow/rules/templatereg.smk.

Also updates pixi lock with latest snakemake to fix a bug in logging and grouped jobs.

@akhanf
akhanf merged commit 788415f into main Oct 30, 2026
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@akhanf
akhanf deleted the snakemake-upgrade branch October 30, 2026 04:08
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