Issues

• Re-optimize unfoldreg on multihist7 for subfield agreement and stability

  khanlab/hippunfold#590 · Filter by author akhanf opened on Oct 25, 2026

• Run multihist7 through HippUnfold and design a triangulation-independent gyrification metric

  khanlab/hippunfold#589 · Filter by author akhanf opened on Oct 25, 2026
  3

• Conda failures in dev-v2.0.0 SIF on CentOS 7

  khanlab/hippunfold#561 · Filter by author JAQuent opened on Jul 9, 2026

• Possible reversed inner/outer surface order in myelin_map.smk ribbon-constrained mapping

  khanlab/hippunfold#560 · Filter by author sionlover opened on Jun 30, 2026

• Poor detection of inter-digitation grooves

  khanlab/hippunfold#554 · Filter by author orenpoliva opened on Jun 3, 2026
  16

• Curvature has flipped intensities across hemispheres

  khanlab/hippunfold#552 · Filter by author JAQuent opened on May 28, 2026
  2

• Update local dry run tests for v2.0.0

  bug
  khanlab/hippunfold#551 · Filter by author Dhananjhay opened on May 26, 2026

• dev-v2.0.0: snakemake throws RuntimeError: can't start new thread, even when restricting cores

  khanlab/hippunfold#547 · Filter by author ajschadler12 opened on May 19, 2026
  3

• dev-v2.0.0: --inject-template dHCP gives "invalid choice"

  khanlab/hippunfold#546 · Filter by author sionlover opened on Apr 22, 2026
  1

• ADNI_T1w_v1 not in hippunfold_latest.sif

  khanlab/hippunfold#545 · Filter by author jordandekraker opened on Apr 20, 2026
  2

• Discrepancy in Neonatal Morphometry between HippUnfold v1.5.2 and v2.0.0 (dev)

  khanlab/hippunfold#538 · Filter by author mahmoud1yaser opened on Feb 5, 2026
  6

  

• Use tempdir for writing output dir in run_quick.py

  khanlab/hippunfold#518 · Filter by author akhanf opened on Oct 1, 2025

• sge cluster requirements

  khanlab/hippunfold#513 · Filter by author jordandekraker opened on Sep 2, 2025
  1

• additional QC images

  khanlab/hippunfold#502 · Filter by author jordandekraker opened on Jul 11, 2025

• QC dice via hippoDeep

  khanlab/hippunfold#501 · Filter by author jordandekraker opened on Jul 11, 2025
  1

• laplace-beltrami occasionally failed

  khanlab/hippunfold#498 · Filter by author jordandekraker opened on Jul 4, 2025
  18

• does --use-gpu flag in V2 works?

  khanlab/hippunfold#495 · Filter by author RicardoRios46 opened on Jun 14, 2025

• Error with conda example on fresh install on macOS

  khanlab/hippunfold#467 · Filter by author Ian-Goodall-Halliwell opened on May 12, 2025
  7

• Warning needed for running two hippunfold processes at the same time to the same output folder

  khanlab/hippunfold#434 · Filter by author mackenziesnyder opened on Apr 16, 2025
  1

• error when using --modality T2w (with limited FOV)

  khanlab/hippunfold#425 · Filter by author springroll-cui opened on Apr 7, 2025
  4

• Pb Chimpanzee data application

  khanlab/hippunfold#400 · Filter by author MaeligChauvel opened on Mar 18, 2025
  9

• auto-afids for optimization

  khanlab/hippunfold#375 · Filter by author jordandekraker opened on Feb 18, 2025
  3

• Use templateflow for hippocampus surface templates

  v2.0
  khanlab/hippunfold#370 · Filter by author akhanf opened on Feb 7, 2025
  1

• script reusability outside snakemake

  khanlab/hippunfold#354 · Filter by author jordandekraker opened on Jan 20, 2025
  2

• how to use hippunfold with CBRAIN Web-based Platform

  khanlab/hippunfold#341 · Filter by author rzxxzxy opened on Jan 2, 2025
  5