Issues

• Merry PROV, snakebids and BIDS into the ultimate neuro* PROV trinity

  khanlab/snakebids#541 · Filter by author yarikoptic opened on Apr 29, 2026

• Reimplement Snakebids expand using SnakemakeFormatter

  enhancement
  khanlab/snakebids#513 · Filter by author pvandyken opened on Feb 20, 2026
  1

  

• No components found when --participant-label requests only non-existant subjects

  bug
  khanlab/snakebids#479 · Filter by author pvandyken opened on Nov 5, 2025

• --participant-label is not merged with configured subject filters

  khanlab/snakebids#478 · Filter by author pvandyken opened on Nov 5, 2025

• ConfigError: Multiple path templates for 't1w' component using generate_inputs

  khanlab/snakebids#469 · Filter by author zihuaihuai opened on Jul 14, 2025
  13

• Snakebids create docs

  khanlab/snakebids#434 · Filter by author akhanf opened on Jun 3, 2024
  3

• Version plugin does not add CLI parameter

  khanlab/snakebids#412 · Filter by author pvandyken opened on Apr 22, 2024
  1

• Extension of BidsComponent.filter api

  enhancement
  khanlab/snakebids#335 · Filter by author pvandyken opened on Sep 6, 2023

• export_sourcedir plugin

  enhancementplugin
  khanlab/snakebids#304 · Filter by author pvandyken opened on Jun 2, 2023
  2

• Mandatory vs Optional components in pybids_inputs

  enhancement
  khanlab/snakebids#293 · Filter by author pvandyken opened on May 16, 2023
  2

  

• Improve implementation of get() in MultiSelectDict

  enhancement
  khanlab/snakebids#292 · Filter by author pvandyken opened on May 15, 2023
  2

  

• Allow specification of snakebids config file

  enhancement
  khanlab/snakebids#257 · Filter by author pvandyken opened on Feb 22, 2023

• Automatically create pybidsdb

  enhancementplugin
  khanlab/snakebids#256 · Filter by author pvandyken opened on Feb 22, 2023

• Method to find entity combinations "missing" from dataset

  enhancement
  khanlab/snakebids#248 · Filter by author pvandyken opened on Feb 16, 2023
  1

• BidsDataset advanced component selection

  enhancement
  khanlab/snakebids#244 · Filter by author pvandyken opened on Feb 11, 2023
  1

• BidsDataset.expand()

  enhancement
  khanlab/snakebids#242 · Filter by author pvandyken opened on Feb 11, 2023
  

• BidsDataset.filter

  enhancement
  khanlab/snakebids#241 · Filter by author pvandyken opened on Feb 11, 2023
  1

• Transition to breaking BidsDataset API

  breaking
  khanlab/snakebids#239 · Filter by author pvandyken opened on Feb 11, 2023

• Breaking BidsDataset API Changes

  breaking
  khanlab/snakebids#236 · Filter by author pvandyken opened on Feb 11, 2023

• add an easy way for user to add a README and dataset_description to their output

  enhancement
  khanlab/snakebids#221 · Filter by author Remi-Gau opened on Jan 3, 2023
  6

• demo on the bids apps website

  khanlab/snakebids#189 · Filter by author Remi-Gau opened on Aug 4, 2022
  6

• Rerunning Apps

  enhancement
  khanlab/snakebids#182 · Filter by author pvandyken opened on Jul 21, 2022
  6

• Document the availability of workflow.basedir and workflow.current_basedir

  documentation
  khanlab/snakebids#109 · Filter by author pvandyken opened on Jan 11, 2022

• Custom Path Wildcard Constraints need Documentation

  documentation
  khanlab/snakebids#108 · Filter by author pvandyken opened on Jan 11, 2022